PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g04780.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 457aa MW: 49041.5 Da PI: 9.4653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g04780.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	281	303	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+++Fs+ L H+r+H Zjn_sc00034.1.g04780.1.sm.mk 281 HKCRKCDQVFSSGPALGDHMRKH 303 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	220	225	247	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0094	229	247	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.77E-5	278	308	No hit	No description
Pfam	PF13912	2.5E-5	281	305	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0024	281	303	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	281	308	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	283	303	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MASSSNRRRR RADGDTEDLE EGEHVPSYHT TSESSDDKCH SLQSRAPEAE IRPPQFSRRM 60 RRRLRRGGPP CCRRRGCTIS DYGSSGHASF SFSGWGATGR RGRAGTKGKA IVVPRSDEQN 120 QSKAAVVSGL NHPLQPKPLA FARPNLLSSF NIASVRPNFY VGESSRSPQS TSSENKPAAA 180 GPSDDAFVHQ QPAATQPDQQ LNVELQLAPP GPPEQAGSAA PRRKYRSEIC GRSYRKHQEL 240 GGHKTGHLIQ RKKFEAAPAA AGFSLDSNAN PAAERQSARE HKCRKCDQVF SSGPALGDHM 300 RKHYEGVPIV VVRKSKKQCV EQPPQPGCPS TSLASPAAAS PPTGSRPRLS GVDICVPVEA 360 PAVQEGTDHI GPREGAPEVQ EGTSPPAGRT LRLFGVDIWV PVEAPAVPEG SYIRPGEGAP 420 DVQEGTDIRP QVEAPAVQER TAMTEDSASI GGQLRRG

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MASSSNRRRR RADGDTEDLE EGEHVPSYHT TSESSDDKCH SLQSRAPEAE IRPPQFSRRM  60
RRRLRRGGPP CCRRRGCTIS DYGSSGHASF SFSGWGATGR RGRAGTKGKA IVVPRSDEQN  120
QSKAAVVSGL NHPLQPKPLA FARPNLLSSF NIASVRPNFY VGESSRSPQS TSSENKPAAA  180
GPSDDAFVHQ QPAATQPDQQ LNVELQLAPP GPPEQAGSAA PRRKYRSEIC GRSYRKHQEL  240
GGHKTGHLIQ RKKFEAAPAA AGFSLDSNAN PAAERQSARE HKCRKCDQVF SSGPALGDHM  300
RKHYEGVPIV VVRKSKKQCV EQPPQPGCPS TSLASPAAAS PPTGSRPRLS GVDICVPVEA  360
PAVQEGTDHI GPREGAPEVQ EGTSPPAGRT LRLFGVDIWV PVEAPAVPEG SYIRPGEGAP  420
DVQEGTDIRP QVEAPAVQER TAMTEDSASI GGQLRRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	62	RRMRRR
2	57	65	RRMRRRLRR
3	300	316	RKHYEGVPIVVVRKSKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18524	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	6e-11	C2H2 family protein