PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g04750.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 263aa    MW: 27197.4 Da    PI: 7.8497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g04750.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.2e-43371361100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+
  Zjn_sc00034.1.g04750.1.sm.mk  37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVIS 117
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq++l+ql+++la++k e
  Zjn_sc00034.1.g04750.1.sm.mk 118 ILQHNLRQLQQDLARAKYE 136
                                   *************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.63436137IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-4337133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASSSASSMP AQSGSVITMA SSSSSAAAAA VCGTGSPCAA CKFLRRKCQP DCVFAPYFPP  60
DNPQKFVHVH RVFGASNVTK LLNELHPFQR EDAVNSLAYE ADMRLRDPVY GCVGVISILQ  120
HNLRQLQQDL ARAKYEISKY QQAAAAAANA STGPNGQQAM AEFIGNGGMP NGGHNFINIG  180
HSSTLGSIGV FGQDHFSNTQ MLSRSYDGGE PIARLGMNGA YEFGYSATMG GAGGPVSGLG  240
SLGVGSFLKS GTAGGDEKTS AGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-53271401114LOB family transfactor Ramosa2.1
5ly0_B1e-53271401114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970852.11e-149LOB domain-containing protein 6
SwissprotQ32SG31e-145LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLK3XL261e-148K3XL26_SETIT; Uncharacterized protein
STRINGSi002599m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-58LBD family protein