PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g04620.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 327aa    MW: 34470 Da    PI: 6.3985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g04620.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-06279301123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++Cgk Fs+   L  H+r+H
  Zjn_sc00034.1.g04620.1.sm.mk 279 HKCKKCGKEFSSGQALGGHMRKH 301
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-7231301No hitNo description
SMARTSM003550.5233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785233260IPR007087Zinc finger, C2H2
PfamPF139122.1E-5233255IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-5278302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321279306IPR007087Zinc finger, C2H2
SMARTSM003550.0026279301IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-10279303IPR007087Zinc finger, C2H2
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MASSPNRRRR RADGDSGGLE EGEIVPSSST TSESSDAKND DNSDSLPSPP PPFSYPPEEN  60
TATGQAAMLP VPTPSSGRES DDTISDDGSS GRAANSGMGA GCSRGCDAES RGKGKAIASS  120
SSSDEQNRSV PAVVSGLNHP LEPMPLAFAT ADLLSSFDIA SVRPNFYVGE SSTSRQFTCN  180
EPALAGPSDE ALVHQQPAAM QQKDLELDLE LRLAPPGPPE QAAPGPAAPP REYRCEICGR  240
SYLKYQQLGG HKTKHLNRGK KFEDGNANPT AACQDTQKHK CKKCGKEFSS GQALGGHMRK  300
HYEGEPIVVV RTMCRAAGAA RPRGGNF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1852459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-14C2H2 family protein