PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00032.1.g00480.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 286aa MW: 31666.7 Da PI: 4.7598 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 69 | 123 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+ +Le++Fe + +++ e+++++A+ l+L rqV vWFqNrRa++k Zjn_sc00032.1.g00480.1.am.mk 69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 123 6778999***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.4 | 5.2e-40 | 69 | 159 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+++qv++LE++Fe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L+ Zjn_sc00032.1.g00480.1.am.mk 69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNTLRSRHDALRHECDELR 149 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreel 91 +++++L++e+ Zjn_sc00032.1.g00480.1.am.mk 150 RDKDALAAEV 159 ******9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 46 | 126 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-18 | 61 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 65 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.71E-16 | 68 | 126 | No hit | No description |
SMART | SM00389 | 6.9E-18 | 68 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-16 | 68 | 123 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.9E-12 | 125 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MKRPSCRGSS VASQGTQEQE SEDSSRYMER QGLDVHGTVD VVASAGTYGD EEEDEDELEL 60 AGGRGGLREK KRRLAADQVS ALERCFEADD KLDPERKARI ARDLRLHPRQ VAVWFQNRRA 120 RWKTKQIERD FNTLRSRHDA LRHECDELRR DKDALAAEVP IRELREKVEK QMAVKLESME 180 DRPLQAVTTV YKDGSTDSDS SAVFNEEASP YSGGAAFDHH PSFNGFTSFL ASSSALGSSF 240 PSMYSGGPHL DQPEADGFLG AVATTDGFLA EEQGTGLGGW YGGDGW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 125 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP099753 | 8e-93 | FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792352.1 | 1e-111 | homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
Swissprot | Q338Z7 | 7e-84 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A0A9JEK4 | 1e-117 | A0A0A9JEK4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J35191.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-36 | homeobox protein 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|