PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00031.1.g02930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 213aa MW: 22391.2 Da PI: 11.4446

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00031.1.g02930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.5	8.9e-19	144	174	1	31
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 Cs+C t kTp+WR gpdg+ tLCnaCGl+y+ Zjn_sc00031.1.g02930.1.am.mk 144 CSHCATLKTPQWRTGPDGPATLCNACGLRYK 174 ******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	7.6E-14	136	176	No hit	No description
SMART	SM00401	4.5E-14	138	195	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.02	138	174	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.1E-14	142	175	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.44E-13	143	174	No hit	No description
Pfam	PF00320	1.6E-16	144	174	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	144	169	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLLGPQAVRP KKVMPFSRPA QEDNDVGGLG GGALSNTSCH AAPTPAPPKA SPELYEEPPR 60 RQRLPPHPAA SKPAAAARAQ WSGAGGTGSA TGRAAAAPPW RRRSGARIRP AAPRAPSSAA 120 SKPTAAASLP WRRRRRNRQR NRTCSHCATL KTPQWRTGPD GPATLCNACG LRYKPRDHGE 180 GGGEPMKVTA DTATASPVVD EFKDVSTDTS TDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	RRRRRNRQRNR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44661	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-13	GATA transcription factor 9