PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00031.1.g02920.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 409aa MW: 42619.8 Da PI: 6.2429

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00031.1.g02920.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.4	4e-18	313	347	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C +t+Tp+WR+gp+g+ tLCnaCGl+y +k++ Zjn_sc00031.1.g02920.1.am.mk 313 CTHCSATETPQWREGPSGPGTLCNACGLHYNSKHR 347 ******************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	13.046	307	342	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.5E-17	307	358	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.56E-15	309	370	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-14	311	346	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.09E-18	312	369	No hit	No description
Pfam	PF00320	7.8E-16	313	347	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	313	338	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MLSPFRAGGN GGGDDIFAGL DDILPGGDLS CPDDRLDYVI KALEGLDDVF LEELQKVGGP 60 PPPRPVADGE QKGALAAETA PGDVPEVPKE DNVGRFGGGA FSNTSCHAAS TSAPPTASGP 120 ADQCGALGGI PDAGFVPPLP AHDAPNRAAA PYVAPPWSAQ RDPYGVIPEL APPFPANDGL 180 LGSVVAPYLD PQPPSVHHTP SGAIPDTAPV HDAVPPATAR ASPSSGCALP TTGETEPAPL 240 LVSFSPLVAD WVVPRKKRQL VTRRNPTWLP KPELYEAPPA APPAAPSRRL EAGGSGNLPV 300 VRRRRNRQRN RTCTHCSATE TPQWREGPSG PGTLCNACGL HYNSKHRLLE TYRPTKSPGF 360 DSGKHSNRQN KAAKIMEKKA AAELMRLTAD TASAPPIGDE FVDVSTSTG

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MLSPFRAGGN GGGDDIFAGL DDILPGGDLS CPDDRLDYVI KALEGLDDVF LEELQKVGGP  60
PPPRPVADGE QKGALAAETA PGDVPEVPKE DNVGRFGGGA FSNTSCHAAS TSAPPTASGP  120
ADQCGALGGI PDAGFVPPLP AHDAPNRAAA PYVAPPWSAQ RDPYGVIPEL APPFPANDGL  180
LGSVVAPYLD PQPPSVHHTP SGAIPDTAPV HDAVPPATAR ASPSSGCALP TTGETEPAPL  240
LVSFSPLVAD WVVPRKKRQL VTRRNPTWLP KPELYEAPPA APPAAPSRRL EAGGSGNLPV  300
VRRRRNRQRN RTCTHCSATE TPQWREGPSG PGTLCNACGL HYNSKHRLLE TYRPTKSPGF  360
DSGKHSNRQN KAAKIMEKKA AAELMRLTAD TASAPPIGDE FVDVSTSTG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34358	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	1e-16	GATA transcription factor 11