PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03500.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 203aa    MW: 21655.3 Da    PI: 9.1673
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03500.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.54.9e-31134189258
                   ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   + v+Y+eC++NhAas+GghavDGC+Efm+  g++gta+al CaAC CHR+FHRreve
  Zjn_sc00028.1.g03500.1.am.mk 134 KVVHYRECQRNHAASIGGHAVDGCREFMAL-GADGTADALVCAACSCHRSFHRREVE 189
                                   5799*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-19132189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-28136188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-25137188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.696138187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MERSGAGKRT EKSRTARTPT KFAVLQPATT LAGKKLLDAF NRTQHLEGAG QASQFIIMQN  60
HTNNWWGTFA SSNGAQPGRA FSSSFLPVSP HQLPFLLVLE APQSPPPTTA TTATMGPKQD  120
PPTANGTATR KETKVVHYRE CQRNHAASIG GHAVDGCREF MALGADGTAD ALVCAACSCH  180
RSFHRREVEV AECSSTTTTT TSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSi027403m2e-42(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.14e-26mini zinc finger 1