PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00025.1.g03350.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 1171aa MW: 128503 Da PI: 11.2128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00025.1.g03350.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	514	533	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zjn_sc00025.1.g03350.1.am.mk 514 FICHVCSKTFNRYNNMQMHM 533 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.138	514	541	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.8E-4	514	533	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	516	536	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
MFIIGQSPSS ERQRRSKSVG RQIGSQGAVE KTSIARAMAA RPRRLSPLAR SALTQDETRG 60 TTWGTQTARR KRNLRTARAR RGVVDCSLAI ESLAPAAHAT ASRGLTGGGH RPQAPAQLYL 120 YDSLTAQPKH RFVSAWPRLQ FCRVMFPLPV HFRRAPGSRG AVAKSFHWSV DMSDVDPTLK 180 LWLQSAAPVV YDPSFEIANQ QKRSPVVLRA DRWRRRGLSL DMGCTFRRPL IAGSLAAPIF 240 SGRRRPSSHH APLLHTVSRP PLPERGIASR IPVPIHTQCR LASGEPYRAP MGRGATAIRR 300 ATSTTQRPSP SISLPLPAVF FFLLAVTCTR LDIDDPRISE RASLPLFSPY AHHRTPPPTK 360 RFRLSGEMAQ AKFVAVAVVV LLIDDVLVSV GRRWRPRYFA ALATSCTREE ADVELNIGLP 420 AIGGYSSSDE APMDEEEDEE DDSMDSEEEK PSRQHDNKCE KEAGDEQVRI EIMDGSDCLR 480 VGGKENMIKG VVSGPGRRFW IPTPVQILIG PVQFICHVCS KTFNRYNNMQ MHMWGHGREY 540 RKGPESLKKG AQAAALALLK LPCFCCAPGC RNNVAHPRAR SLKDFRTLQT HYKRKHGAKR 600 FGCRRCGKPF AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGG GHLPVAPQEQ 660 APPAAVPPQA RQRIIRFDQA APGNIGLGHD DPRLGGRAAP AFVGRLALPA TTSVYFPFLA 720 SPANFGDAYQ THLGSYVVAH SILFVSIRPA AHSTDAGRSA ISSARTHGCP PACNAPRPAR 780 VPIKPDAISA AFLNRAVRFS SLLSDLTQQK RGATLRDADA ARARAFAGHP RSTFSPQSVV 840 GPRALTEPKK WSSVDVLMIG TCWIFNPIGG LSRHQITHGC TLGVRLIYSL IRPLASRPVH 900 DDSAASNKLT LEIILSERRI GMRAASATDR ESFDLTQSDT LPPEQLMSQL KSLLRRLDQL 960 PSHHDRSPRL RTARPRRPLR RTAGATSAVG HAPRPSERKR AVENSKCMRL VAWLFRPQRD 1020 GATTVSRSTA AFVPAPSATA AQRRSVPSPL TEQSGARGVT FCEPRPEETP PRRDGVTNKS 1080 PSSSVVDVVG SGPGSVLERL RPTGAGGVMS ACARTGAVAS RRLVAGGIAE SSSRRECERR 1140 TGRPEMETPA CFLVERPQWS FSCQMPMYVA I

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

MFIIGQSPSS ERQRRSKSVG RQIGSQGAVE KTSIARAMAA RPRRLSPLAR SALTQDETRG  60
TTWGTQTARR KRNLRTARAR RGVVDCSLAI ESLAPAAHAT ASRGLTGGGH RPQAPAQLYL  120
YDSLTAQPKH RFVSAWPRLQ FCRVMFPLPV HFRRAPGSRG AVAKSFHWSV DMSDVDPTLK  180
LWLQSAAPVV YDPSFEIANQ QKRSPVVLRA DRWRRRGLSL DMGCTFRRPL IAGSLAAPIF  240
SGRRRPSSHH APLLHTVSRP PLPERGIASR IPVPIHTQCR LASGEPYRAP MGRGATAIRR  300
ATSTTQRPSP SISLPLPAVF FFLLAVTCTR LDIDDPRISE RASLPLFSPY AHHRTPPPTK  360
RFRLSGEMAQ AKFVAVAVVV LLIDDVLVSV GRRWRPRYFA ALATSCTREE ADVELNIGLP  420
AIGGYSSSDE APMDEEEDEE DDSMDSEEEK PSRQHDNKCE KEAGDEQVRI EIMDGSDCLR  480
VGGKENMIKG VVSGPGRRFW IPTPVQILIG PVQFICHVCS KTFNRYNNMQ MHMWGHGREY  540
RKGPESLKKG AQAAALALLK LPCFCCAPGC RNNVAHPRAR SLKDFRTLQT HYKRKHGAKR  600
FGCRRCGKPF AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGG GHLPVAPQEQ  660
APPAAVPPQA RQRIIRFDQA APGNIGLGHD DPRLGGRAAP AFVGRLALPA TTSVYFPFLA  720
SPANFGDAYQ THLGSYVVAH SILFVSIRPA AHSTDAGRSA ISSARTHGCP PACNAPRPAR  780
VPIKPDAISA AFLNRAVRFS SLLSDLTQQK RGATLRDADA ARARAFAGHP RSTFSPQSVV  840
GPRALTEPKK WSSVDVLMIG TCWIFNPIGG LSRHQITHGC TLGVRLIYSL IRPLASRPVH  900
DDSAASNKLT LEIILSERRI GMRAASATDR ESFDLTQSDT LPPEQLMSQL KSLLRRLDQL  960
PSHHDRSPRL RTARPRRPLR RTAGATSAVG HAPRPSERKR AVENSKCMRL VAWLFRPQRD  1020
GATTVSRSTA AFVPAPSATA AQRRSVPSPL TEQSGARGVT FCEPRPEETP PRRDGVTNKS  1080
PSSSVVDVVG SGPGSVLERL RPTGAGGVMS ACARTGAVAS RRLVAGGIAE SSSRRECERR  1140
TGRPEMETPA CFLVERPQWS FSCQMPMYVA I

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361054	1e-157	AK361054.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131F08.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP63939	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	2e-81	WIP domain protein 5