PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00025.1.g03310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 268aa    MW: 29861.2 Da    PI: 7.26
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00025.1.g03310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-082573147
                                  TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  r +WT +Ed+ +  a +  + +   +W +Ia++++ gRt+ +  +r+q +
  Zjn_sc00025.1.g03310.1.am.mk 25 RRPWTWDEDKMFETALAIVPEEapnRWVLIASMVP-GRTAQEASDRYQLL 73
                                  679*****************99*************.*****999999976 PP
2Myb_DNA-binding48.22.4e-15121165347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE+ l++d+  ++G  +Wk I+r+  k+Rt+ q+ s+ qky
  Zjn_sc00025.1.g03310.1.am.mk 121 PWTEEEHRLFLDGLDKFGRSDWKNISRHSVKTRTPSQVASHAQKY 165
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-82476IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-112578IPR009057Homeodomain-like
PROSITE profilePS500907.4572574IPR017877Myb-like domain
PfamPF002498.2E-72573IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-62573IPR009057Homeodomain-like
CDDcd001671.12E-72774No hitNo description
PROSITE profilePS5129418.323114170IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-10116174IPR009057Homeodomain-like
SuperFamilySSF466891.36E-17116169IPR009057Homeodomain-like
SMARTSM007176.9E-11118168IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.9E-17119169IPR006447Myb domain, plants
CDDcd001676.48E-11121166No hitNo description
PfamPF002491.9E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MADYYGAGGQ SSSSSPWTEP STSGRRPWTW DEDKMFETAL AIVPEEAPNR WVLIASMVPG  60
RTAQEASDRY QLLLFDVDLI ESGLVEFPQA WDKDDRAKLV HVPANLDHDT GARRGRRRSV  120
PWTEEEHRLF LDGLDKFGRS DWKNISRHSV KTRTPSQVAS HAQKYFLRKA NRANAKRKSI  180
NDVTTSPPRE TVQGNEEDHD QISITPRTRF FGDAPAGEYD AGGYLADTAL PVQSAVGLLS  240
SAQPGAPAAR IDHQVSIVSF KLRFLAKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808699.19e-62transcription factor DIVARICATA-like
TrEMBLA0A3L6T4N18e-61A0A3L6T4N1_PANMI; Transcription factor DIVARICATA-like
STRINGSi023363m7e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.24e-41MYB family protein