PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g02880.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 395aa    MW: 42310.3 Da    PI: 6.9144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g02880.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-09111132426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   + C++f++ G Ck+Gd+C FaHg
  Zjn_sc00024.1.g02880.1.sm.mk 111 AACPDFRK-GGCKRGDNCEFAHG 132
                                   78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.81E-5106136IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61108134IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5113134IPR000571Zinc finger, CCCH-type
SMARTSM0035612142165IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258142166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMMMGEGAAH APPWQHGPAS GGVEGDDAYT LLAALRRYLP SNDSAERDED GEEEAAVAAL  60
DAYACDEFRM YEFKVRRCAR GRSHDWTDCP FAHPGEKARR RDPRRYHYSG AACPDFRKGG  120
CKRGDNCEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV LPAQQQQQTA  180
SPRGVPAAAA AGPLAESYDG SPLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS  240
PDAAAALRRG SWPGIGSPVN DVVASLRQLR LASSSPRLAP SGASFLAGYP SGAFGSPKST  300
GLYSLPSTPT GPSPVTITTP SGATVMTIDR LNLGLLEEAE PVMERVESGR ALREKVFERL  360
SKEATVPNDT TAVATADGAP AGSAPDVAWV TDLVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-177C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0A9E0J00.0A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGSi024826m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.19e-83C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]