PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00024.1.g01660.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 260aa MW: 27231.7 Da PI: 9.587 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++ yf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il Zjn_sc00024.1.g01660.1.sm.mk 52 PCAACKLLRRRCAQECPFSLYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAIL 132 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq++ l+aela++++e Zjn_sc00024.1.g01660.1.sm.mk 133 TLQQQVQALEAELAAVRAE 151 ***************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.821 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-39 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSTASHWQDH EVGRKIKKES AAAAADRMTA AAAAGAGSAG AGPGSALNTI TPCAACKLLR 60 RRCAQECPFS LYFSPLEPHK FAAVHKVFGA SNVSKMLLEV HESQRADAAN SLVYEANLRL 120 RDPVYGCMGA ILTLQQQVQA LEAELAAVRA EIVRRRYRPA AAASAAGVAT VLPSSHASQL 180 LAASAAGRGL PAASARSAAT RTATLAASSS SSSTVYAAAS NSTDYSSITN ENEFLFITQK 240 QRQAPTLGDK NTKGEYYLQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 52 | 173 | 11 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 52 | 173 | 11 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-134 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167556.1 | 1e-112 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 1e-67 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3B5ZSF7 | 1e-110 | A0A3B5ZSF7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452Y3X4 | 1e-110 | A0A452Y3X4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1AS_43FB6A3CF.1 | 1e-111 | (Triticum aestivum) | ||||
STRING | Traes_1DS_BB8508CC6.1 | 1e-111 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-54 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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