PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g06550.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 413aa    MW: 44592.3 Da    PI: 6.1769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g06550.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-103123683589
                                   EEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                            B3  35 tltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                    l + d++   +W++k++y  ++ks++y+l+  + eFvk ++L++gD++v++ ++r++
  Zjn_sc00023.1.g06550.1.sm.mk 312 ILEMDDLELpDVWKFKYRYwpNNKSRMYILE-STGEFVKRHKLEAGDVFVIYQHKRTG 368
                                   455555333589*******887888888888.9******************9544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003286381IPR003340B3 DNA binding domain
CDDcd100176.05E-12295369No hitNo description
Gene3DG3DSA:2.40.330.103.6E-14296376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-11297373IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7322366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADATGSSSG AGAGAGAATG HGDLGWGVTQ GQYQVYLTSS TNGIAPNAAN IYPPTHQYPI  60
GLIPAQRPMN SSPIAAPPQQ LVPPPQYHVV QSQPPPTAGR YQHQDYPAYG NTAPSTTPVG  120
FAGWRMYSNT LMSFSQPAPL SGGGGGNSNI SVVNSNGFHQ NSSSYATTMW TNYVPSNQPY  180
YTNYAPAATI NPVLQAPAIQ NINNHQERDL GFAPSFGATA PTVPSIHYEV MPQRTTNSST  240
AQLFQEVKNS TFRTSGPGGE IEGSEASEEQ DPAPELEAQN QLGQGFRDIN ATDNTRDAEA  300
NLPALIDKDG IILEMDDLEL PDVWKFKYRY WPNNKSRMYI LESTGEFVKR HKLEAGDVFV  360
IYQHKRTGRH VARAVKAIPQ SSNLNLLECQ CMREGRSSEE CGFAVSAPPP KKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-2329638825116B3 domain-containing transcription factor FUS3
6j9b_D1e-2329638825116B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963379.18e-92putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9283e-96A0A3L6Q928_PANMI; Putative B3 domain-containing protein
STRINGPavir.Gb00057.1.p3e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-23B3 family protein