PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g06190.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 378aa    MW: 40839.5 Da    PI: 8.9176
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g06190.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.49.3e-1980159272
                      trihelix   2 WtkqevlaLiearremeerlrrg.........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                   Wt +e+l Li+a+r ++er + g         ++++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + t
  Zjn_sc00023.1.g06190.1.sm.mk  80 WTLHETLILITAKRLDDERRSGGvvagspttpRSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYEARAT 159
                                   **************8888887553333333335******************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.93472145IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-473147IPR009057Homeodomain-like
PfamPF138376.2E-1279157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSADNVAQPA APMSGSSDPS PSPSAAAASS PLGHYRPHPH PHAHMTPPSP ASASASAPAP  60
PPGPPPSPAS APRDYRKGNW TLHETLILIT AKRLDDERRS GGVVAGSPTT PRSAEQRWKW  120
VENYCWNHGC LRSQNQCNDK WDNLLRDYKK VRDYEARATH PPGSAAAAHG SYWSMERHER  180
KDRNLPTNLA PEVFDALSDV LARRAVRRGG VAIAGTPPPP LALPPPPPSH PSPPNPLVSH  240
PRPPTPHHLP LPAAMAPPPP ATTSVSGEEE EVSGSSESGD DEGSGADEPE PKRRRLNRLG  300
SSVVRSATVL ARTMVACEDK RERRHRELLG LEERRLRLEE ERMEVRRQGF AGLVSAVNSL  360
SSAIHTLVSD HRSGDSSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291295KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-121trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ91e-120A0A1B6PNZ9_SORBI; Uncharacterized protein
STRINGSb06g032410.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-43Trihelix family protein