PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g05290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 484aa    MW: 52424.6 Da    PI: 9.7982
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g05290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP95.26.4e-30267338178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+++g  +       rfh l+efD++k+sCr+rLa+hn+rrrk+++
  Zjn_sc00023.1.g05290.1.am.mk 267 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLH------QRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 338
                                   6******************************999877654......379**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.7E-24262323IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.307265336IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-28266339IPR004333Transcription factor, SBP-box
PfamPF031101.2E-20268335IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGRTPSVRVA PRVTEIAYAR RGGSLFGAGH GKGGVRSCPR PGRLQLARSL SSFLQGTHAT  60
VPYATLKRLR YWTSPAASEL ASTRRERDDS VLAASSPPKK KKRKMMNIPA AGANACDEFA  120
YVSPGAAPPS LLPIMEQESS IQREQLGYNL EANSLALLPP STAAAAHQQT TIAAHDILQF  180
YPAAAASSHY LGGGGGNPYS HHFGGSNYQA YYQQAAQASP EYYFPTLVSS AEENMASFAA  240
TQLGLNLGYR TYFPPRGGYT YGHHPPRCQA EGCKADLSSA KRYHRRHKVC EHHSKAPVVV  300
TAGGLHQRFH LLDEFDDAKK SCRKRLADHN RRRRKSKPTD ADAADKKRAQ ASKAAAGAKD  360
KAGSSSKNNM DIGDGLTTQI LGSALLSKEQ DQAMDLGEVV KEAVDPKGKA SMQQQHAHHH  420
GMSNHSFPFP TSSGSCFPQS QAVSSDNTSN IAQVQEPSLA FHQHHQHSNI LQLGQAMFDM  480
DFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-182683351184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKKKRK
2330347RRRRKSKPTDADAADKKR
3331336RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769911e-111AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare.
GenBankAB7769921e-111AB776992.1 Oryza rufipogon LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, strain: W630.
GenBankAK0681041e-111AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence.
GenBankAL4421171e-111AL442117.1 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete sequence.
GenBankCP0126121e-111CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551351e-111CR855135.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158D24, complete sequence.
GenBankJX4627831e-111JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds.
GenBankJX4627841e-111JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824698.10.0protein LIGULELESS 1-like
SwissprotQ01KM71e-180SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0A9DKR30.0A0A0A9DKR3_ARUDO; Lg1
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-32squamosa promoter binding protein-like 8