PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g01690.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 180aa    MW: 19628.2 Da    PI: 7.1174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g01690.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-056284123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C++ F++   L  H+++H
  Zjn_sc00023.1.g01690.1.sm.mk 62 YTCTFCHREFKSAQALGGHMNVH 84
                                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.08E-65988No hitNo description
Gene3DG3DSA:3.30.160.607.9E-46087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00356284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1156289IPR007087Zinc finger, C2H2
PfamPF139122.2E-66285IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAPTSSTEEP VVKRIPLHQL LKLQHRLKPA VMWSWAAAPG RPAHDDEADE DALGGAWPPR  60
SYTCTFCHRE FKSAQALGGH MNVHRRDRAK MRGHHGAAGQ KLMGAAPAAG EARPHAAARA  120
EYAVFYPILN SNAAGTVLIP SGDVLLSTPL ALAPAHERCH DVSDGEDDKE VDLELRLWWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125784229superman protein
2l1o_A1e-125784229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880752.13e-63uncharacterized protein LOC112938737
TrEMBLA0A1E5VI671e-72A0A1E5VI67_9POAL; Uncharacterized protein
STRINGSi012796m6e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-21C2H2 family protein