PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00022.1.g07470.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 259aa MW: 27370.3 Da PI: 7.7827 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 219.8 | 8.1e-68 | 19 | 215 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee............ 70 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhCt+llsvnl+ + +a ++l+ ++ + Zjn_sc00022.1.g07470.1.sm.mk 19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQSSllsptsphglld 99 578********************************************99867677888898888777778889999***** PP YABBY 71 .........lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvirPPekrqrvPsaynrfike 135 l+e+ + ++++ n ++++as+ ++++ + +++ e+p vp v+rPPekrqrvPsaynrfik+ Zjn_sc00022.1.g07470.1.sm.mk 100 elalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRPPEKRQRVPSAYNRFIKD 180 *99999987777777777777777777777777666655477766455555554214677********************* PP YABBY 136 eiqrikasnPdishreafsaaaknWahfPkihfgl 170 eiqrika+nPdi+hreafsaaaknWahfP+ihfgl Zjn_sc00022.1.g07470.1.sm.mk 181 EIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 215 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-70 | 20 | 215 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.03E-8 | 155 | 208 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-4 | 164 | 207 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSSSSSSTAA FPLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCTNLL 60 SVNLRGLLLP PAAPPAANQL NFGVQSSLLS PTSPHGLLDE LALQAPSLLM EQASANLSSI 120 TGNSYSSSCA SNVPAMSMQP AAAKPVQHEP ELPAKSVPSV NRPPEKRQRV PSAYNRFIKD 180 EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQG LKKTFKTQDG AEDMLLKDGL 240 YAAAAAAAAA AVNMGVTPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452852.1 | 1e-142 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-131 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-131 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3L6QIB7 | 1e-142 | A0A3L6QIB7_PANMI; Uncharacterized protein | ||||
STRING | Sb04g033590.1 | 1e-141 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-64 | YABBY family protein |
Publications ? help Back to Top | |||
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