PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06430.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 658aa    MW: 70150.1 Da    PI: 7.3636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06430.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054199216219
                                   EETTTTEEESSHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                   +C++Cg+ F+++ +L  H
  Zjn_sc00022.1.g06430.1.am.mk 199 VCENCGEEFTSWKSLLDH 216
                                   6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.746116138IPR007087Zinc finger, C2H2
PfamPF139122.3E-4116138IPR007087Zinc finger, C2H2
SMARTSM003553.5116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM00355260198218IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-7366389No hitNo description
PfamPF139124.7E-9367391IPR007087Zinc finger, C2H2
SMARTSM003550.13367389IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221367394IPR007087Zinc finger, C2H2
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-7471498No hitNo description
PfamPF139129.3E-13475499IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995476498IPR007087Zinc finger, C2H2
SMARTSM003551.6476498IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280478498IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MAVAEASAHM QGTIPEDHWS RVSSPRLFYS SSVGPLSLAV ARRYKRCCGT ASSPLSFLLP  60
GSSTPCMPLP EICRDRSIMA IAMENQTPVV QMPLVPASPL PPPPPPPPPL PQAYKHHCKV  120
CKKGFVCGRA LGGHMRAHGV ADDVLSEDDD DEEDNVFDDD GAGSFDGDSS SEQASPSATT  180
SKRMYTLRAN PGRLKSCRVC ENCGEEFTSW KSLLDHGRCN NYEDGDGGTD GSTRRSPPLL  240
DEEEVVEEDM ALATAGWSKG KRTRRTKMMV VGNGSVTEMT RLRATSPSSE EEDLANGLVM  300
LSSSRSAQPP PAVSDADQES CASASKDVVD RNRLLVPQPI SMMAPAVPQL KLVAPPQPAS  360
TVPRGLFECK ACKKVFTSHQ ALGGHRASHK KVKGCFAAKL ESDRRERPQP VTATPRENIK  420
VVDAKTPSVH TANADGNTST SGVVTATAAP ETAVTQANEA PSMSAASPAK KKGKVHECSI  480
CHRVFMSGQA LGGHKRCHWL TTGSGDPITG AVSKFHPIVA QDHVMHAVCQ QLTLGRPIFS  540
AAHPSLDLNN VPTNPSAAMK QAAELNDSVL CLNAPASLYM PSWTAVHSNG INVNKAATSS  600
RNVDEAGAAA TEDEADSRNA KKRKISDLKD MNMAGETSPW LQVGIGLRSE SKEKSIQE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735506e-37AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A3L6P9H70.0A0A3L6P9H7_PANMI; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-14zinc-finger protein 2