PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g05350.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 468aa    MW: 52231 Da    PI: 11.8302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g05350.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29416465150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   k ienk+nrqvtfskRrng+ KKA+ELSvLCdae+a+iifss+gklye+ 
  Zjn_sc00022.1.g05350.1.am.mk 416 KLIENKINRQVTFSKRRNGLVKKAYELSVLCDAEIALIIFSSRGKLYEFG 465
                                   569*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40408467IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.422408468IPR002100Transcription factor, MADS-box
CDDcd002651.50E-37409466No hitNo description
SuperFamilySSF554558.37E-28409466IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30410430IPR002100Transcription factor, MADS-box
PROSITE patternPS003500410464IPR002100Transcription factor, MADS-box
PfamPF003196.5E-26418464IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30430445IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-30445466IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MHRDPKCATP PNTGPWIMAV AKRSVRATAK MSARTIIRTR PLAAAADAPE RPEVAFSRSS  60
ALLVFVTLFL YKFAVAFPTG SCFLLQQGSK ADRGKAPQVR VPSITGRRPV SEHRRITSSA  120
VHHATQLTTP RFRPDPADRP RCAFLDEPPK PPSLSTENRA RRRVGERKHA RVPDPIYLFN  180
ERALQRGAVH HVLLMLPLDP IGYCKKIAQP PRPQRLLGST TKQEPCQLWQ NTSLNPNSAS  240
DATHFLPSTV LLQIEMARAH EFVLSEGRGY TRSERDGCPG RRSPPCSIPL LRLPPRAAIT  300
MRQTRRAWVP NARVSAGLCS VAVAGKENPR TVARAMTPGF RLGTSMCCLI NGRGGKMRWR  360
RRPKRRPRTG IYVARPLPVF LVLVECAALD CPRFRLGFPV RRLKTDAMGR GRVELKLIEN  420
KINRQVTFSK RRNGLVKKAY ELSVLCDAEI ALIIFSSRGK LYEFGSAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17408466159MEF2C
5f28_B2e-17408466159MEF2C
5f28_C2e-17408466159MEF2C
5f28_D2e-17408466159MEF2C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359366RRRPKRRP
2361367RPKRRPR
3362368PKRRPRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1983291e-61AY198329.1 Lolium perenne MADS4 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6369522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-32AGAMOUS-like 6