PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00022.1.g02620.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 661aa MW: 70086.5 Da PI: 10.5003

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00022.1.g02620.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	432	491	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +alkcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ss Zjn_sc00022.1.g02620.1.am.mk 432 PEALKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSS 491 5789****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	423	484	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-33	434	489	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	435	489	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	437	473	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MRRHSSDHRS KGDQDLSTTP HVNAVQDNPA EFATAASRTP NTRKEEVAVF CRAMVRSACQ 60 SAAEHGRDRS NGTFAAGMYP AWRCGTVWRD ADDRAFAGAA RPAQGSAARL GERARPLFNG 120 NGLQRAVANA RTPVTACAPA ARTPSANGRP ARDPPTGRPV ARLFACADGQ GLSVGHGRVR 180 RAKAIAPALI WAMRRAGGRA CTSHQRARRA GREQQLPQPP GAVTDRLACP AASSSSSSSG 240 DARPTSWPPG EGIPPRRAAI DRPRSPDWVS EREPAVVLAE FYELMFASIR RSTACQRSEM 300 EKAEVAGSTS PSRKKAEAVD GNERCRFIHA GALPPPGSEH DKPTEIFTGW LVCDPEATPS 360 GWSSRLAALP PTKRYLARRR RLRLLPRAMQ EFQSIPGLAG RLFGGAGASD LYRAHQAQQG 420 PGARCGGVSP APEALKCPRC ESTNTKFCYY NNYNLSQPRH FCKSCRRYWT KGGVLRNVPV 480 GGGCRKAKRS SASAASSTPS TPTSTEAKNP RRAPAPSPRR TSSGRSSPTG LAAAAAPVTP 540 SSSNNIAVTG HSSANPFSTV DVAPPAPIFA DQAAALASLF APPPPPQLPV FSFTAQSNKD 600 EAALVVGQAA RPDDEAASDM APFTSLDAGI FEQLGDASAA AAYWNAGSCW TDVQDPSMYL 660 P

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MRRHSSDHRS KGDQDLSTTP HVNAVQDNPA EFATAASRTP NTRKEEVAVF CRAMVRSACQ  60
SAAEHGRDRS NGTFAAGMYP AWRCGTVWRD ADDRAFAGAA RPAQGSAARL GERARPLFNG  120
NGLQRAVANA RTPVTACAPA ARTPSANGRP ARDPPTGRPV ARLFACADGQ GLSVGHGRVR  180
RAKAIAPALI WAMRRAGGRA CTSHQRARRA GREQQLPQPP GAVTDRLACP AASSSSSSSG  240
DARPTSWPPG EGIPPRRAAI DRPRSPDWVS EREPAVVLAE FYELMFASIR RSTACQRSEM  300
EKAEVAGSTS PSRKKAEAVD GNERCRFIHA GALPPPGSEH DKPTEIFTGW LVCDPEATPS  360
GWSSRLAALP PTKRYLARRR RLRLLPRAMQ EFQSIPGLAG RLFGGAGASD LYRAHQAQQG  420
PGARCGGVSP APEALKCPRC ESTNTKFCYY NNYNLSQPRH FCKSCRRYWT KGGVLRNVPV  480
GGGCRKAKRS SASAASSTPS TPTSTEAKNP RRAPAPSPRR TSSGRSSPTG LAAAAAPVTP  540
SSSNNIAVTG HSSANPFSTV DVAPPAPIFA DQAAALASLF APPPPPQLPV FSFTAQSNKD  600
EAALVVGQAA RPDDEAASDM APFTSLDAGI FEQLGDASAA AAYWNAGSCW TDVQDPSMYL  660
P

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	3e-85	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	3e-85	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK100892	3e-85	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBank	AK101321	3e-85	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	3e-85	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	3e-85	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	3e-85	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	8e-30	DOF zinc finger protein 1