PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00021.1.g01330.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 254aa    MW: 26816.9 Da    PI: 7.8043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00021.1.g01330.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006978100123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C + F ++  L  H++ H
  Zjn_sc00021.1.g01330.1.sm.mk  78 FKCNYCVRKFYTSQALGGHQNAH 100
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-675105No hitNo description
PROSITE profilePS5015711.21978105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEIEAVVEVE DREEVRGREQ APAQEMDLLG AVGSEPEANV IQALEAKGKE KAMVEVEEKP  60
VTATVAGRNG GGQKRRAFKC NYCVRKFYTS QALGGHQNAH KRERSLAKRA AAAAAGRGMY  120
DGGDPFMPPH HLRVPHAWLY YSAGGRPSFP GLGGRGSAVP FYGVHQGWAA HEGQPSVAGV  180
ARHGGADGGQ PSAPHAYGYA ASSRMTPAPT ILDSGMAGLR WTGGVARGST GDHGVAHEVK  240
QEESDGTIDL NLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683031.13e-75zinc finger protein 3-like
TrEMBLA0A3L6RLA44e-81A0A3L6RLA4_PANMI; Uncharacterized protein
STRINGSi014969m1e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.19e-16zinc-finger protein 1