PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00021.1.g00800.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 579aa MW: 62786.7 Da PI: 8.8855

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00021.1.g00800.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	330	379	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +++++kyF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ks+ Zjn_sc00021.1.g00800.1.am.mk 330 DHIGFNEIRKYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSI 379 6899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	317	400	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-20	332	379	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MTRTFSQRAC AAARLNRGRS VRGSGSREPT NAPAAGRPHH QRPLHDRLHA LHTAVTRLDR 60 LASRIYTSAA TVTCHCHCSP ASYVRRPSNS ASAHGESLVD PALLDWASSS SVVGNGDDLV 120 PAGSEEGDLL AVIAPPGPRN LEIRNSNLAS SSDHGPLLLP VPDDSSSSSA MILRNEESHR 180 LPVSPAAYDP SYYFDGLPPL PETAGGLDDP LMLQPFSDID LDAFGGADEH IKASPPADDI 240 MIVVPADRPY AAGQVAGVDG GNGDPKPVAT VADCYHPPAD SVDFGMAAMR YGERSDQASS 300 VAALPPPMPR LRHQVRMRSG TDPAGKTRLD HIGFNEIRKY FYMPITKAAR EMNVGLTVLK 360 KRCRELGVAR WPHRKMKSIK ALILNVQEMG KGMSPAAVQR ELAALETYCA LMEADPSIEL 420 TDRTKKLRQA CFKESYKRRR AASFNGKIDH IYNFGHELLQ AAQGGKLTPQ ESSAGTGTAA 480 APRVPGSGSS RRRSARPSSK PSAPLWPDAV EEVGEAAEEV DEEARRREDP GEAAAAPWRT 540 GWRRSPPWRT RRRPRAVEVE GEAAAAPWRT GWRRSQLYC

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MTRTFSQRAC AAARLNRGRS VRGSGSREPT NAPAAGRPHH QRPLHDRLHA LHTAVTRLDR  60
LASRIYTSAA TVTCHCHCSP ASYVRRPSNS ASAHGESLVD PALLDWASSS SVVGNGDDLV  120
PAGSEEGDLL AVIAPPGPRN LEIRNSNLAS SSDHGPLLLP VPDDSSSSSA MILRNEESHR  180
LPVSPAAYDP SYYFDGLPPL PETAGGLDDP LMLQPFSDID LDAFGGADEH IKASPPADDI  240
MIVVPADRPY AAGQVAGVDG GNGDPKPVAT VADCYHPPAD SVDFGMAAMR YGERSDQASS  300
VAALPPPMPR LRHQVRMRSG TDPAGKTRLD HIGFNEIRKY FYMPITKAAR EMNVGLTVLK  360
KRCRELGVAR WPHRKMKSIK ALILNVQEMG KGMSPAAVQR ELAALETYCA LMEADPSIEL  420
TDRTKKLRQA CFKESYKRRR AASFNGKIDH IYNFGHELLQ AAQGGKLTPQ ESSAGTGTAA  480
APRVPGSGSS RRRSARPSSK PSAPLWPDAV EEVGEAAEEV DEEARRREDP GEAAAAPWRT  540
GWRRSPPWRT RRRPRAVEVE GEAAAAPWRT GWRRSQLYC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971918.1	7e-88	uncharacterized protein LOC101757335
TrEMBL	A0A3L6SLA0	6e-87	A0A3L6SLA0_PANMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-35	RWP-RK domain-containing protein