PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00020.1.g01120.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 31604.9 Da PI: 7.0681 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 65 | 87 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk F + L++H +H Zjn_sc00020.1.g01120.1.sm.mkhc 65 CSyeGCGKIFIDAGALRKHAHVH 87 77779**************9887 PP | |||||||
2 | zf-C2H2 | 21.4 | 6.4e-07 | 92 | 116 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk Fs nLk H++tH Zjn_sc00020.1.g01120.1.sm.mkhc 92 YICHyeNCGKAFSLDFNLKAHMKTH 116 89**********************9 PP | |||||||
3 | zf-C2H2 | 16.8 | 2e-05 | 157 | 182 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+r+ H Zjn_sc00020.1.g01120.1.sm.mkhc 157 YVCPydGCDKAYIHEYKLNLHLRKeH 182 9***********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-13 | 59 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.388 | 63 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0079 | 63 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.25E-8 | 66 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-12 | 91 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.549 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.005 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-9 | 150 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.61E-6 | 152 | 180 | No hit | No description |
PROSITE profile | PS50157 | 9.39 | 157 | 187 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 157 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MQAAAHRRHR WVKEWVPQDL VVAGGPCALY KWVREDRLAA LKGKDKEQGT EAAKPEPNTE 60 VLFLCSYEGC GKIFIDAGAL RKHAHVHGER QYICHYENCG KAFSLDFNLK AHMKTHSADN 120 YHNQGAPTVN HNPPAHHHHK PVKSSATPPV PSADRPYVCP YDGCDKAYIH EYKLNLHLRK 180 EHPNHDQDAG VQAAASSKGT ASKNSRRSKP NITTKMPPSK IPRHAGGYAT PPPAISAPGE 240 HQWPRQASYE DDSEETEEEG DNAEDGWRYR GASSDDEKTE DEE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316183.1 | 1e-132 | zinc finger transcription factor YY1 isoform X2 | ||||
Swissprot | Q2V3L3 | 5e-72 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | C5XU70 | 1e-130 | C5XU70_SORBI; Uncharacterized protein | ||||
STRING | Sb04g022470.1 | 1e-131 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06634.1 | 9e-66 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|