PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00020.1.g00060.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24082.1 Da    PI: 6.8086
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00020.1.g00060.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-271059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ fsstg+lyeyss
  Zjn_sc00020.1.g00060.1.am.mkhc 10 RIDNTTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMTFSSTGRLYEYSS 59
                                    8***********************************************96 PP
2K-box91.21.9e-3076158486
                           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                     ++  ++ +++ + +q+e+a L+++++nLq+++R+l+GedL+ L+ keLq+Le+qLe+sl+ +RskK++l++++i+el +
  Zjn_sc00020.1.g00060.1.am.mkhc  76 QQVAANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNAKELQSLENQLETSLRGVRSKKDQLMFDEIHELNQ 154
                                     4445588999********************************************************************9 PP

                           K-box  83 keke 86 
                                     k  e
  Zjn_sc00020.1.g00060.1.am.mkhc 155 KIYE 158
                                     9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006161IPR002100Transcription factor, MADS-box
CDDcd002651.00E-44277No hitNo description
SuperFamilySSF554557.98E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-2683156IPR002487Transcription factor, K-box
PROSITE profilePS5129713.69986195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIVIRR IDNTTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMTFSS TGRLYEYSST  60
SMKSLIDRYG KAKEEQQVAA NPNSELKFWQ REAASLRQQL HNLQENHRQL MGEDLSGLNA  120
KELQSLENQL ETSLRGVRSK KDQLMFDEIH ELNQKIYETE GPSGVNRESP TPYNFAVVEK  180
TNIPVQLELN TLPQENDDEP STAPTLGLQL NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19183183MEF2C
5f28_B4e-19183183MEF2C
5f28_C4e-19183183MEF2C
5f28_D4e-19183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1121491e-162AF112149.1 Zea mays MADS box protein 2 (mads2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952891.11e-134MADS-box transcription factor 27
SwissprotQ6EP491e-133MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A368PPS01e-133A0A368PPS0_SETIT; Uncharacterized protein
STRINGBRADI3G46920.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-80AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]