PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g02220.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 727aa    MW: 82399.6 Da    PI: 9.778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g02220.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.1e-146447221697
                                     EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                              B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                                     l +  ++a+e+     + ++t ++ ++ g++W+ ++ + +++++ +l +GW +F+++ngL+++D+++++l+++ ++ ++
  Zjn_sc00019.1.g02220.1.sm.mkhc 644 LEIGVRYAAEYlP---AVGQT-VVLQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVRDVCLLELMENeRNITM 717
                                     5566777777742...22334.55677*********77777766.6999**********************98788888 PP

                                     EEEEE CS
                              B3  93 vvkvf 97 
                                     +v+++
  Zjn_sc00019.1.g02220.1.sm.mkhc 718 NVHII 722
                                     88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.6E-759128IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.21E-865128IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:2.40.330.101.0E-15424530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17424529IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-6430530IPR003340B3 DNA binding domain
CDDcd100171.20E-15430528No hitNo description
PROSITE profilePS5086310.659431530IPR003340B3 DNA binding domain
PfamPF023625.4E-8447529IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-19619722IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17620722IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-14625722No hitNo description
PROSITE profilePS5086311.068627725IPR003340B3 DNA binding domain
SMARTSM010191.8E-6630725IPR003340B3 DNA binding domain
PfamPF023622.0E-12644722IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
RNPKPLRKLR AAALKALRTV ATNTEEVHLQ SPSPSIPIFV VSSFPRTRQG FKPRFKVEIE  60
AESERALTPD TGADSDTMCE VCGDVGFKRL LVYCRDCTCS AAHQYCLEKV VFDASLVDWV  120
CYECRQKRGE ISCNRSLKIM SCQRAPSHAQ SDSTVHESVT KRRDLSSGVG LWTNRKSHMV  180
KNEYLNKLLS SKVDTSQKKH FKRKPDMEPM DNCSYKRRQI AINISNSKSL QSCETIGSKT  240
AKGNNGGNLH IENGTVTLNI KHPKPLIAQC LGDINHSHIL KGIEGSPNKW KDPQPLRNPF  300
KSIVMKRKKV VLGSKKVETS TSTADYEKPV HEKCGNTSGG MMNMCANMSS QNMVWTDRFY  360
HGGKTIRMAT STALEESEDV LAENRSLELD NLLAVPRGDY ILSRTSCLSE AQKERVMAFI  420
QKTKPQITVF VSVIGKSSVQ PPGPYLGISK EYAFAYFPHE STKITLQMPG MDKMWHPLFY  480
KRKENRKNFI MGRWMDFVRD NNVQEGDICL LEPVKEDRRS TFTVYLLRTS ATHATDGDGF  540
LRAGPYPSES IAKMASEVHV KGELSKGKHV SVERLMHESS HESPETKDTG DPIFVPYITP  600
CRHDLSKSQK KIIDERVRAI QSKVPIYLAV MKNNNAGHAQ RWMLEIGVRY AAEYLPAVGQ  660
TVVLQRMGKT WNTQMVIHNG RRWFLNGGWT KFARDNGLRV RDVCLLELME NERNITMNVH  720
IIFREEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-147B3 domain-containing protein Os03g0619800-like isoform X3
TrEMBLA0A0A9HSP40.0A0A0A9HSP4_ARUDO; Uncharacterized protein
STRINGPavir.Ia01276.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-07B3 family protein