PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g01960.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 422aa    MW: 45355.3 Da    PI: 9.7152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g01960.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024278300123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cgk+F+++  L  H ++H
  Zjn_sc00019.1.g01960.1.am.mk 278 HRCSVCGKVFPSHQALGGHKSSH 300
                                   79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159278305IPR007087Zinc finger, C2H2
SMARTSM003550.0083278300IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.12E-8278300No hitNo description
PfamPF139122.9E-11278302IPR007087Zinc finger, C2H2
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-8342369No hitNo description
PfamPF139121.3E-13346371IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349347369IPR007087Zinc finger, C2H2
SMARTSM003550.12347369IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280349369IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MATAAASVHV RVADALLYPE GERAHGTAAG AGSHCHACAS SDACALHLRR AGATRALKAG  60
GEWTAEPAVM RKSSHSRPVQ SGSQMEWNYG TLPSRRAAQC YTYGITRPPA QTRRFAPRGG  120
SPCTIAAGQR PIVLMRQSLR RFHPGADSRP SSRPALHWHN LRSQPSSHPH PLDTPVIFSQ  180
ISRTRPAPFG SGSCTSHRST AMAVDTVLDA PAGLLRRLSC RDLEYEGDQV QAWAKRKRSS  240
RRHPRAPTEE EHLALCLLML GRGHRDYEDQ NPAPATEHRC SVCGKVFPSH QALGGHKSSH  300
RSRPTPPAAA TATTITTVVE DPVVATAASS ASTPATSCST SGTGRVHECS VCKKTFPTGQ  360
ALGGHKRCHY QGAIVTPERG FDLNIPALPD ISEWCVPVTV AEEEDVVLSP LAFKKPRFMI  420
PA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562286.13e-57zinc finger protein 1
TrEMBLA0A0A9AQT53e-61A0A0A9AQT5_ARUDO; Uncharacterized protein
STRINGBRADI1G14750.11e-56(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-35salt tolerance zinc finger