PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00019.1.g01520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 306aa    MW: 33861.1 Da    PI: 8.2658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00019.1.g01520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000281030323
                                  ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                  C++C+ksF++  +L  H+ +H
  Zjn_sc00019.1.g01520.1.am.mk 10 CKYCKKSFPSGRSLGGHMAMH 30
                                  ******************999 PP
2zf-C2H217.41.2e-0582103223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C+ C k+F +++ L  H+r+H
  Zjn_sc00019.1.g01520.1.am.mk  82 ECQLCFKVFASSDALSMHMRVH 103
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-7830No hitNo description
PfamPF139122.2E-8832IPR007087Zinc finger, C2H2
SMARTSM003552.7830IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-776103No hitNo description
PROSITE profilePS5015711.44881108IPR007087Zinc finger, C2H2
SMARTSM003550.01281103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.001482103No hitNo description
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868220242IPR007087Zinc finger, C2H2
PfamPF139122.6E-7220242IPR007087Zinc finger, C2H2
SMARTSM003550.23220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPPRGMKHWC KYCKKSFPSG RSLGGHMAMH RKRLKKQPSS TPALSSADGG ACRYGLREKR  60
HKTWLMCDSS DDEYLTLLPK TECQLCFKVF ASSDALSMHM RVHTHHQQTM VANKVEESTE  120
GKGCGLRDFT VSTPVVLTYG DQEVGAARIL LMLSRHSDMC SASVECCNED YERDSNSVYH  180
VQQSESQSGD DEPMKPENCS SDGRMKFSSS SNVLKATAIH KCKLCSRVFT SGNALGGHQK  240
FHKFHGHRKV QSTPNSAAAE TGHLVEEDNR SLSLNPSSSS SDRNYSGTIG KSELNLWLDA  300
SSILSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.11e-102uncharacterized protein LOC112876858
RefseqXP_025796824.11e-102uncharacterized protein LOC112876858
TrEMBLA0A3L6S7661e-100A0A3L6S766_PANMI; Uncharacterized protein
STRINGPavir.Ib03920.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-08C2H2-like zinc finger protein