PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00019.1.g01270.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 577aa MW: 62296.5 Da PI: 6.7391

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00019.1.g01270.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	147.2	1.6e-45	298	555	110	355
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +rvH +D+d +G+QW++L+qa+ sRp++ +p+lR+T+v+++ g + +++e+g+ La f +++g pf+f ++ + Zjn_sc00019.1.g01270.1.am.mk 298 RRVHFVDYDSAEGVQWVSLMQAMISRPDSvlSPHLRVTAVSRSGGGVAWAVQEVGRHLAAFVASIGQPFSFGQCRLDSKDR 378 89***********************55459******7777***********************9999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse..........sFlerfl 258 +++ + r+ +g al+ n+vl+ ++ +++ + +l +k+v+vve++ ++e Fl+ f+ Zjn_sc00019.1.g01270.1.am.mk 379 FRPATVRMVKGGALIANCVLNQAAATTTFKRSAGSVVSFMAGMATLTAKLVTVVEEDQGDaEKEdgeggdaaagGFLAWFM 459 ****************887777555555557888**************954424336688999999*** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 + l+ ysa+ dslea++p++s+ r vEr++l+++i + v+ + ++ + + + W e+++ GF ++++s ++ +qa++ Zjn_sc00019.1.g01270.1.am.mk 460 QELHRYSAVCDSLEAGFPTQSRVRGLVERVILAPNIASTVSRAYRAVDGDDKARGGWGEWMRGNGFWAMQFSCFNHSQARM 540 ***************************************************************************** PP GRAS 340 llrkvksdgyrveees 355 ll ++++ y++ee s Zjn_sc00019.1.g01270.1.am.mk 541 LLGLFNDR-YTMEEMS 555 **66.*9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.349	289	555	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-43	298	555	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
LAESPTRVFL AHLELLLLDP NPGSGCREKS CASSGRAQHA WAHANRGAAR MVQCGCGIDD 60 SGMVAQIRKQ AAATRSLPPP HRSFSPVPTR QNTSGFQTKA QSQYKDRNQA SAMDVTMDDV 120 AGELKFSVCS SNTTSCSHDI WNIGLSPVAD WGLFCPDDGG QDLHGLIESM LWDSTLGGAA 180 VDDHAGLHPM FFCDEACCYT NGSAPSGTTT MKVDTPVYDF DVQGDCLEKA LRLLHLLMAA 240 AEALYGMHKS RELARVVLGL LKEIVSHTRA MNTAAFNMDR LAAHFTDALQ GRLDGCDRRV 300 HFVDYDSAEG VQWVSLMQAM ISRPDSVLSP HLRVTAVSRS GGGVAWAVQE VGRHLAAFVA 360 SIGQPFSFGQ CRLDSKDRFR PATVRMVKGG ALIANCVLNQ AAATTTFKRS AGSVVSFMAG 420 MATLTAKLVT VVEEDQGDAE KEDGEGGDAA AGGFLAWFMQ ELHRYSAVCD SLEAGFPTQS 480 RVRGLVERVI LAPNIASTVS RAYRAVDGDD KARGGWGEWM RGNGFWAMQF SCFNHSQARM 540 LLGLFNDRYT MEEMSPNNCR VSRSCAGASS LLARPPM

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

LAESPTRVFL AHLELLLLDP NPGSGCREKS CASSGRAQHA WAHANRGAAR MVQCGCGIDD  60
SGMVAQIRKQ AAATRSLPPP HRSFSPVPTR QNTSGFQTKA QSQYKDRNQA SAMDVTMDDV  120
AGELKFSVCS SNTTSCSHDI WNIGLSPVAD WGLFCPDDGG QDLHGLIESM LWDSTLGGAA  180
VDDHAGLHPM FFCDEACCYT NGSAPSGTTT MKVDTPVYDF DVQGDCLEKA LRLLHLLMAA  240
AEALYGMHKS RELARVVLGL LKEIVSHTRA MNTAAFNMDR LAAHFTDALQ GRLDGCDRRV  300
HFVDYDSAEG VQWVSLMQAM ISRPDSVLSP HLRVTAVSRS GGGVAWAVQE VGRHLAAFVA  360
SIGQPFSFGQ CRLDSKDRFR PATVRMVKGG ALIANCVLNQ AAATTTFKRS AGSVVSFMAG  420
MATLTAKLVT VVEEDQGDAE KEDGEGGDAA AGGFLAWFMQ ELHRYSAVCD SLEAGFPTQS  480
RVRGLVERVI LAPNIASTVS RAYRAVDGDD KARGGWGEWM RGNGFWAMQF SCFNHSQARM  540
LLGLFNDRYT MEEMSPNNCR VSRSCAGASS LLARPPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-20	283	551	112	356	Protein SCARECROW
5b3h_A	6e-20	283	551	111	355	Protein SCARECROW
5b3h_D	6e-20	283	551	111	355	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008653941.1	0.0	nodulation-signaling pathway 2 protein
TrEMBL	A0A060CZR1	0.0	A0A060CZR1_MAIZE; GRAS transcription factor (Fragment)
TrEMBL	A0A317YHJ4	0.0	A0A317YHJ4_MAIZE; Nodulation-signaling pathway 2 protein
STRING	GRMZM2G055263_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7580	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	6e-62	GRAS family protein