PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g07120.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 703aa    MW: 75534.2 Da    PI: 9.1788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g07120.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.2e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd+ lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zjn_sc00018.1.g07120.1.am.mk 14 KGPWTPEEDLMLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding47.34.7e-1567112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++l++++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zjn_sc00018.1.g07120.1.am.mk  67 RGNFTDQEEKLIIHLQVLLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.935965IPR017930Myb domain
SuperFamilySSF466891.54E-2911108IPR009057Homeodomain-like
SMARTSM007177.5E-141363IPR001005SANT/Myb domain
PfamPF002493.8E-161461IPR001005SANT/Myb domain
CDDcd001671.76E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129419.83166116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002497.3E-1467112IPR001005SANT/Myb domain
CDDcd001676.58E-1169112No hitNo description
ProDomPD1257745.0E-24614693IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-27634686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-20635684IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.361636685IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDLMLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQVLLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMQ  120
AGESGGGDQD GVRVSESAGA GDRVGGEKRP TVHKGQWERR LQTDIHTARQ ALREALSLEP  180
SPPAKMAPLP TPAGSATYAS SAENIARLLE GWLRPGSGCG KGPETSGSTF TTGTTQQRPQ  240
CSGEGAASAS ESHSGGTAAM AVQTPECSTE TSKMVGAAGA GAPPAFSMLE NWLLDDGMAH  300
GEVGLIDVAW LGALVRDSGT AMATHACYSY SSMDMHESSK ASHRKKLEKK KARVKSNATR  360
DPGGRDGRSA TPCGLGNAQG PDSMPAPTQA GRPQGATALL RAPCIMQACR GTPNLIQSSC  420
REEGRKEGRT HAVEGRWRVP SAHLVRGLNA PALPAPSLID LKALSPLITA APLRSRNGME  480
LNGPPEADPG DGIRRRRDGE TSAPPTDKRA RTYCCRPAGS VRSIDRNSRG AVGVRSGTVR  540
SILSDRMEVI GARYERPAVA SPTRRISPVS HDDVGGGGGD SYLPVVHSKQ GLHSPCAETR  600
LWLAGWEEEG RLTMKRLLIL RRCEPIVRFT CCSVRYGECR RNHAATTGGY SVDGCREFIA  660
EGEEGTGGAL KCAACGCHRS FHRRVQVYEV SWDYAASDSS STE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-25141164105C-Myb DNA-Binding Domain
1msf_C6e-25141164105C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519141e-157JF951914.1 Aegilops tauschii clone TaMYB31 R2R3-MYB protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-94myb domain protein 94