PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g03670.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 360aa MW: 38304 Da PI: 8.4493

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g03670.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.9	1.1e-13	273	323	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++Nk+L + ee+k+ Zjn_sc00018.1.g03670.1.sm.mkhc 273 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNKELERKQEEMKES 323 79*************************************999988888874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.0E-14	268	323	No hit	No description
SMART	SM00338	1.4E-9	269	328	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.553	271	323	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-10	273	322	No hit	No description
Pfam	PF00170	8.2E-12	273	323	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.30E-26	273	325	No hit	No description
PROSITE pattern	PS00036	0	276	291	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEFKSGRSSS QRRPSSAADG APVANQGSVY SLTFDELQST LGGAAAGGSG VGKDFSSMNM 60 DELLRNIWTA EETHAMASTS TAGPGAPPAP LQRQSSSLTL PRTLSTKTVD EVWRNLVRDE 120 PQEGAVAGAG QQTQRQSTLG EMTLEEFLVK AGVVRENPAP VLPPMPPPSR PVPVAPKSAT 180 AFGNFPGADD AAAATLGFAP VGMGNLTLGN GLMPRATGMG AGALAAQIAV SQLDSGVKGN 240 GDLSSPTETL PYSFGGMISG RRNGGGVEKV VERRQRRMIK NRESAARSRA RKQAYTMELE 300 AEVQKLKEQN KELERKQEEM KESQKNEGVR HLTTWARKTE ITALVWDFEQ LGFLDSPTSC

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEFKSGRSSS QRRPSSAADG APVANQGSVY SLTFDELQST LGGAAAGGSG VGKDFSSMNM  60
DELLRNIWTA EETHAMASTS TAGPGAPPAP LQRQSSSLTL PRTLSTKTVD EVWRNLVRDE  120
PQEGAVAGAG QQTQRQSTLG EMTLEEFLVK AGVVRENPAP VLPPMPPPSR PVPVAPKSAT  180
AFGNFPGADD AAAATLGFAP VGMGNLTLGN GLMPRATGMG AGALAAQIAV SQLDSGVKGN  240
GDLSSPTETL PYSFGGMISG RRNGGGVEKV VERRQRRMIK NRESAARSRA RKQAYTMELE  300
AEVQKLKEQN KELERKQEEM KESQKNEGVR HLTTWARKTE ITALVWDFEQ LGFLDSPTSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802824.1	1e-135	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	9e-97	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A2S3H026	1e-134	A0A2S3H026_9POAL; Uncharacterized protein
TrEMBL	A0A2T7ET33	1e-134	A0A2T7ET33_9POAL; Uncharacterized protein
STRING	Pavir.Ba02029.1.p	1e-134	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	9e-27	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]