PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g03080.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 751aa    MW: 80737.3 Da    PI: 9.2342
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g03080.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.78.7e-31331383558
                   ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ 
  Zjn_sc00018.1.g03080.1.am.mk 331 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 383
                                   8*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-28309384IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-29331381IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-28331382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.752332381IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.13E-12469531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-23471531IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-19481531IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDHGLASPRC YKTTCWVGTA VRMDLGVWTV TSTHVTNPVH SPHQQRSRTE SNALHLVDAA  60
HVWTTATTVR DGWRPPIRNR AHGGRNQSDR AGRMEGAQLA CSGEVACSLP RPHFRCLLFR  120
SGVGDRREAN TVNWTKRTAP VEALPAKIDG AVYSSVTSCV GAKPLEKSSG ERDSHAAKKA  180
MSATQRNAIS SPVEVSGGRE IGQERTKRGL GDERAAPRQN WQPDGVHTLS YLLISLLTLL  240
SRSLSFACHN SRSQTQEAPS SCLLASQAAM DFDDHDDGDE EMAPLPPVLS SSYETPPQSA  300
AFGGGVAPAA KPPSEPGSRA NKDPGGGGSG RYRECLKNHA VGIGGHAVDG CGEFMAAGEE  360
GTLDALRCAA CNCHRNFHRK ESPTAEGSPI SPAAIVAYGA MPHQQFSPYY RTPAGYFHHT  420
PHHMAAGHQQ RPLALPSTSH SGRDDVDDLS GMAGPMSALG PLSGMSLGAG PSGSGGSGSG  480
KKRFRTKFTQ EQKDRMLAFS ERLGWRIQKH DEAAVQQFCD EVGVKRHVLK VILTPPPHSM  540
HPRASAHAPP QSSCWIVSMA AIPLRAKLLS LAAEGRRRRR CTGRERQRCQ LSMWKSGTER  600
MEKQENTLSS QLPLGPLPRA IARCHGVLAA SAALLIFHLA PLCFEYARYA DAWLDDDGGL  660
FMSGHRVWVG SAEQRGEPSA GAIRGCGRAS CLCPQRSAGR GEGLPDCPLG SLHAHLASRK  720
HAVAVVHVCL LTAGRTRFRD VVLGFFLAKL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-204825311867ZF-HD homeobox family protein
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126173e-91CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-49homeobox protein 22