PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g00930.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 257aa    MW: 27811.5 Da    PI: 10.6036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g00930.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.5e-37171501128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrFhPtdeelvv+yL++k+ +++l++  vi+ v d+ +++PwdLp    a++ e+yfFs r+  ++ g r++ra 
  Zjn_sc00018.1.g00930.1.sm.mkhc  17 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDVARLDPWDLP---GARDGEVYFFSLRRVPATGGVRRRRA- 90 
                                     79****************************.8899998***********...44778********9988888888885. PP

                             NAM  79 ksgyWkatgkdkevlsk......kgelvglkktLvfykg....rapkgektdWvmheyrl 128
                                      sgyWkatgk k+v+        k+ lvg+k+ L+f++g     ++++++t Wvmheyrl
  Zjn_sc00018.1.g00930.1.sm.mkhc  91 GSGYWKATGKAKPVFLLgsgcggKRYLVGVKTALTFHRGepsrASESSSRTAWVMHEYRL 150
                                     89*************987777655566**********7622213455679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4315183IPR003441NAC domain
PROSITE profilePS5100545.00117183IPR003441NAC domain
PfamPF023655.8E-2418150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEWPVPAARD GQAPRKLPPG FRFHPTDEEL VVQYLRRKAL SRPLPAAVIP VVHDVARLDP  60
WDLPGARDGE VYFFSLRRVP ATGGVRRRRA GSGYWKATGK AKPVFLLGSG CGGKRYLVGV  120
KTALTFHRGE PSRASESSSR TAWVMHEYRL AVPGVGVEQR KHATHGLAAH PGEEWIVCRV  180
FSKTSPIRRP DQDAAGETPG NLASAAPPRD QGAGRLSLLL SPPQPQASSS SCVTGVTEVS  240
DQDEVNSGRG KSSQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-3391857170Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957303.13e-98NAC domain-containing protein 41
TrEMBLA0A0A9GST61e-98A0A0A9GST6_ARUDO; Uncharacterized protein
STRINGSi030942m1e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-47NAC domain containing protein 41