PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g06120.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 321aa    MW: 35506.7 Da    PI: 8.651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g06120.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-1069118154
                                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Zjn_sc00017.1.g06120.1.sm.mkhc  69 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPRNDKATILGDTIQMLKDL 118
                                     5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1466138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1367141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.81768118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-769118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-769122No hitNo description
SMARTSM003531.2E-774124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
PTCLCICSLR TRHGRPGRGD HAPAPVSVFP SSAAIDRRGH QPPEDGFFTR DADPSRRMEC  60
QAQGSTSARK VQKADREKMR RDKLNEQFQE LGNALDPDRP RNDKATILGD TIQMLKDLTS  120
QVNKLKAEYT SLSEEARELT QEKNELRDEK ASLKSDVDNL NNQYQQRMRV MYPWAGMEPS  180
VVIGPPAPYP YPVPVHIPSG AVPMHPQMQA YPFFRSQTSG TIPSPYMAYT QPCHPPTYQP  240
SNQLNTQVPH SSSHRSNSPA QDCRSKSSTL QQESCGGKNS DVGDVASDLE LKTPGSSAPS  300
HSDIAKGVRT PLLTQKQKSN A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689460.0BT068946.1 Zea mays full-length cDNA clone ZM_BFb0018C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.11e-159transcription factor bHLH121
SwissprotQ9LT233e-73BH121_ARATH; Transcription factor bHLH121
TrEMBLK3YU581e-158K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-73bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]