PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00017.1.g05700.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 25247.3 Da PI: 10.6121 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 4.1e-30 | 158 | 215 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +p ++++tYeg+H+h+ Zjn_sc00017.1.g05700.1.sm.mkhc 158 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 215 99***********************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-15 | 121 | 154 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 145 | 215 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.354 | 151 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-26 | 152 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 156 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 158 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEDLMRRVGG SVPGDARGGG QLTPRLRAAM ASVLSRRTGH ARFRRGPVVV PPAEHLQQTP 60 DGAAAKMDAA FSASASSSHP STTLVSFTVT AGGEGSVSGG YRGLFQSASD RARSENDDGA 120 GGKPRGGRCH CSKKRKPRVV KVIRVPAISS RNADIPPDDY SWRKYGQKPI KGSPYPRGYY 180 KCSTVRGCPA RKHVERDPGE PAMLIVTYEG DHRHDTRPAP DQGIERHAGV DADRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 144 | 218 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094685 | 7e-99 | FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952436.1 | 8e-70 | WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A1E5V1I5 | 3e-69 | A0A1E5V1I5_9POAL; Putative WRKY transcription factor 11 | ||||
STRING | Si017889m | 3e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 2e-42 | WRKY DNA-binding protein 15 |