PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g05160.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 219aa    MW: 24912.3 Da    PI: 9.166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g05160.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-1196137351
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                      +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Zjn_sc00017.1.g05160.1.sm.mkhc  96 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAAQLYDRAAF 137
                                     79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.72971150IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-795140IPR016177DNA-binding domain
SMARTSM003806.0E-495152IPR001471AP2/ERF domain
PfamPF008471.8E-595138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-598142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSWKDSLP VDLPKPIDDV EPVHSNAKPF SVHPLPSTEI CNVLVDSPSG  60
MDSFKEERKQ YYPGKEIKRR KRHRRKQYVD QEPCIMRGVY FKNMKWQAAI KVDKKQIHLG  120
TVGTQDEAAQ LYDRAAFMCG REPNFELSEE VKQELQKYTW EEFLAKTRNT ITSKKQRKAG  180
LLRCSKAELV MGQSDGDTEM INGGGSSNSD SGDAENSAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151501.11e-120uncharacterized protein LOC100285135
TrEMBLB6U1661e-119B6U166_MAIZE; DNA binding protein
TrEMBLC0P9B01e-119C0P9B0_MAIZE; Ethylene-responsive transcription factor-like protein
STRINGPavir.Aa01947.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-46ERF family protein