PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g03460.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 261aa    MW: 29377.5 Da    PI: 8.2499
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g03460.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-067297123
                                    EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                    ++C+   Cg++F + s L+ Hir  H
  Zjn_sc00017.1.g03460.1.sm.mkhc 72 HVCQypECGRRFAQESKLRAHIRAqH 97
                                    689999*****************888 PP
2zf-C2H215.93.8e-05134159123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     y Cp   C+k + + + L+ H+r+ H
  Zjn_sc00017.1.g03460.1.sm.mkhc 134 YICPydGCDKAYIHEYKLNLHLRKeH 159
                                     89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-106095IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-86098No hitNo description
PROSITE profilePS5015711.55272101IPR007087Zinc finger, C2H2
SMARTSM003550.00647297IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-9126157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.73E-6129157No hitNo description
PROSITE profilePS501579.286134164IPR007087Zinc finger, C2H2
SMARTSM003550.0023134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQPAAVRRHR WVKEWVPQDM VVAGGPCALY KWVREDRLAA VKGKGKEQGA EAAKPEPNTE  60
AHMKTHSADN YHVCQYPECG RRFAQESKLR AHIRAQHEKN PGLSTVNRNP PDHHHHKPVK  120
SSATPPAPSA DRPYICPYDG CDKAYIHEYK LNLHLRKEHP NHDQDAGAQV AAAFKGTISK  180
KSHRSKRNIT ATMPPAKKPK HKGGSTTPLS VNAPGEHQWP RARQALYEDD SEETEEEGDN  240
AEDGWRYRAA SSDDEKTEDE E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316183.18e-82zinc finger transcription factor YY1 isoform X2
TrEMBLA0A0A9D1Z02e-85A0A0A9D1Z0_ARUDO; Uncharacterized protein
STRINGGRMZM2G140016_P012e-85(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-37C2H2 family protein