PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00016.1.g06880.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 24984.8 Da PI: 7.5066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Zjn_sc00016.1.g06880.1.am.mk 58 YSCSFCQREFRSAQALGGHMNVH 80 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.9E-6 | 55 | 85 | No hit | No description |
PROSITE profile | PS50157 | 11.261 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0049 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-5 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAEQISKYWG SARSSSSTSP IIPSWATSYS SEPSWEEQAF ARDAAAHLGG CVWPPRSYSC 60 SFCQREFRSA QALGGHMNVH RRDRALLRQG SSPDDGQEAS VEQPKQRPSF SRAVSNPSPT 120 APPPSYLTSI IKESRNNLFM TMRVEATDQC DDVELRRMKR RRLDPPLPIF LQTTVSLVAT 180 QGVDHDAKVF VTWKRDEPAP VEADERHGAG ADAPSPQPQG AMDAAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 53 | 80 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 53 | 80 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 162 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828169.1 | 7e-57 | uncharacterized protein LOC112903166 | ||||
TrEMBL | A0A0A9VPW5 | 4e-75 | A0A0A9VPW5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ha00323.1.p | 3e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 4e-25 | zinc-finger protein 10 |