PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g04030.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 207aa    MW: 22755.9 Da    PI: 10.9319
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g04030.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.9e-1975109135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Zjn_sc00016.1.g04030.1.sm.mkhc  75 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 109
                                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-1569128IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-1370110No hitNo description
CDDcd002028.35E-1374110No hitNo description
Gene3DG3DSA:3.30.50.102.1E-1574110IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS00344075100IPR000679Zinc finger, GATA-type
PfamPF003209.6E-1775109IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.17675105IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
SKDSPPRPSY AFPQPPSPLS RQLTYVVAKK QSEISSAAPG PRRDLQARIG GLMDSAEHKV  60
IGIGVVVPEE SRPFCVECRT TATPMWRGGP TGPRSLCNAC GIRYRKKRRQ ELGLDNKQQP  120
KQQAQQQQQQ RQPQPPPQPP QQLQGQQDLR RDLSEATSAV KDSNSSTKST SSLQVVKKRR  180
VLMGVEEAAI LLMALSSSSR SPTLLHG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280127e-37KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655008.13e-47PREDICTED: GATA transcription factor 23-like
RefseqXP_015692844.13e-47PREDICTED: GATA transcription factor 23-like
TrEMBLA0A3L6REC33e-51A0A3L6REC3_PANMI; GATA transcription factor 23-like
STRINGOB05G13650.11e-46(Oryza brachyantha)
STRINGSb09g004315.11e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-19GATA transcription factor 23