PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00016.1.g01820.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 225aa MW: 23646.2 Da PI: 6.1593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g01820.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Zjn_sc00016.1.g01820.1.am.mk 54 YECVFCKRGFTTAQALGGHMNIH 76 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.19E-6	52	80	No hit	No description
PROSITE profile	PS50157	10.99	54	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MESGSNRESK VGDEAMKTSP PGQEDQAAVA GAGEEVAAAS PPRAPAAAGP KPYYECVFCK 60 RGFTTAQALG GHMNIHRRDR AKPARESPAG GTVPTVSRNI EWYNKYGRLV SPYPSVPTSS 120 TAPMPVGSSS GSNLGMYYCP STSSGIAAAV DAEGMISPSS VSPRELSLFG AATRDHHDLH 180 LGLGIHGEAD DEGSCMPPEG SSERQAGEPE KELDLELRLG RRPRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805746.1	1e-64	uncharacterized protein LOC112884551
TrEMBL	A0A1E5WER2	2e-66	A0A1E5WER2_9POAL; Uncharacterized protein
STRING	Pavir.Cb01744.1.p	3e-62	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-14	C2H2 family protein