PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00016.1.g00480.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 31646.8 Da PI: 11.7341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g Zjn_sc00016.1.g00480.1.am.mk 109 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFTTAEDAARAYDRAALLLYG 158 59****999.**********954...5**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.445 | 109 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.99E-18 | 109 | 164 | No hit | No description |
Pfam | PF00847 | 3.9E-12 | 109 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 109 | 166 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-37 | 109 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 110 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MRMRARCTAL SLSLSLRPLY LTTAPLHQAH PPRPPPPSLA RSPQRKAQHH HPSLSLSSPS 60 LSPFTHIPAP LPRPMEPNSQ QLPAATAAES SGGGGSRSRK GGPENGNFRY RGVRQRSWGK 120 WVAEIREPRK RSRKWLGTFT TAEDAARAYD RAALLLYGPR AHLNLTAPPP ELLASAQRAS 180 SNAHSSTSAP PPLRPILPRP AAASTNQRSP AAFQHHHHHQ QQVQLHLLAP QLPAQLPPPL 240 YYASTATAST VTTTAQPQEP AVAPLSMAPL ASASVTEEQA LTPDEAAAAA GSPITA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 110 | 165 | 6 | 62 | ATERF1 |
3gcc_A | 4e-17 | 110 | 165 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY125490 | 4e-76 | AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds. | |||
GenBank | BT069838 | 4e-76 | BT069838.1 Zea mays full-length cDNA clone ZM_BFb0287E16 mRNA, complete cds. | |||
GenBank | EU941236 | 4e-76 | EU941236.1 Zea mays clone 1419729 mRNA sequence. | |||
GenBank | KJ727551 | 4e-76 | KJ727551.1 Zea mays clone pUT5411 AP2-EREBP transcription factor (EREB164) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568646.1 | 3e-50 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A0Q3G600 | 6e-49 | A0A0Q3G600_BRADI; Uncharacterized protein | ||||
STRING | GRMZM2G093595_P01 | 4e-40 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 3e-22 | ERF family protein |