PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g05520.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1451aa MW: 155154 Da PI: 10.4519

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g05520.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	735	766	4	36
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRt 36 W t E++ll+ a k++G+g+W++++ +m+ R+ Zjn_sc00015.1.g05520.1.am.mk 735 WDTREELLLASALKRHGTGSWDSVSMEMQ-SRC 766 99***************************.998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0034	731	789	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-6	735	767	IPR001005	SANT/Myb domain
CDD	cd00167	1.64E-4	735	786	No hit	No description
SMART	SM00297	1.5E-6	862	1224	IPR001487	Bromodomain
Pfam	PF00439	1.2E-9	1148	1208	IPR001487	Bromodomain
SuperFamily	SSF47370	1.22E-12	1149	1221	IPR001487	Bromodomain
PROSITE profile	PS50014	10.594	1150	1205	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.6E-11	1150	1246	IPR001487	Bromodomain
CDD	cd04369	2.92E-12	1150	1219	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1451 aa Download sequence Send to blast
MLVRSLARPL TFPVKLLSPG RPSDAHVGGA WPACYELSVR RFRPPSCRLL PACLLLCKVN 60 DRGRHSVGQG GHWEGTVAGI VQLFQGSGWG DDRTTATVQP VAPRTRPISS LERPSGQAEW 120 VQRGLISLHP LGRKLRSFLA AQSPALCDYP AAETMKASIK FLDDDRPLMR AKSGLSAGGD 180 PRELRFDLST TFSSGPALRL SYRPNDPGLP FALTVRAGVG PLGSPGRAPF VIAAEFNLLS 240 SDPSSPAFFL RLKPRLGDFS LGHTIRSSAV PAPAPRTIVE ASDGDGEGHE VNYKAFSFSG 300 NGIAAAGRSG GLGLGALLSG MRLTTRSVLP LWGRASLRFN WGLRVPPELQ PGALADGHSK 360 GARAPVSKMP LLVMSKISIE QSPRSDGVRK CARADASVAA TADGSDGSGH GGGEEVAFSL 420 VRRQLEELNV ENVMLRRAVE DLRAEIRSSM DASPAAPRVD ARRSPPPPQP QSHSFLAKPD 480 RRGNGKEPAA ENAKKASAVA VDDVGEELKK ALEARRRLPR HEPSHGVLPR RKQRETPDVD 540 NDKKNLYGST STSLCAKIIV SHTTPPLKSS PAFAPPATFV AFSTHAPDSP VNAQPNPTFF 600 DRSSTNHTER EHCHKTRRLV PQRCVARVAR VAAKPESMEL CVKDSMITDA GKRFIIPSKI 660 AGGDEARSPN QTNQTLATFH FYPWRRRYEP PRPLKPRRRS GRAEESGMTP RSDDPDVAPG 720 PVPVPVSAAA GGEIWDTREE LLLASALKRH GTGSWDSVSM EMQSRCVSAA DARFTPSGCR 780 QRALLLHRRF AAGGGGDDDG DPDAAAADAL VEKLRKLRCD ELRRAVEQHD LLIGAAPGDP 840 SDAYRSVAVF SLVEMLTRRV FIIRMIRSLQ SKVKRLEEER ERSNSGKRTP AVKEEAEDEE 900 AVHATGSPKD DDLAGADRVS GGESGRSCKE SNSTDLKPRP GNDAGTASPS AAGDGDAEAR 960 EEEAAGGESV SVKREETSGE SVAGSKEADA TKENSDEQSW ASPSRRASWL TERHGEGGKD 1020 AEEALPSTSA PAALPAVEAE ALSAFLESVR TSKPGSVFER RLESQRRTWS RTARTVASGA 1080 GPSDERGEVE IRAQVGGAGE GAFRAHAWPA KGQIISGHVG VRNLLGPSCR PTCSKQRSTC 1140 SAYCELDDAN YRSTIRRHVD LETIRSKLEV GGSGPRYSSA SEFYRDLLLL CTNALVFFPR 1200 GSPEHAAAVQ TRALVSKHMS ASLRKDRPGT SGKAAAATSA ASKKPKADAD VGSLLEKTAP 1260 IIVCRKRSSI TKAAAAKAEK VKEETEEDQE DDAKKMVATK EKTRGLRTTK TRGGLTRKAA 1320 PRQKAGKDSE SESVAAEGTK KSDKKGGRGA STGGVAKKRN AVDFLNRMKQ NSGPSTERVS 1380 LLETLKLSAA AEEKKPGKGE ARKESGSGSK RGGKATPPGR RMGRPPKRAA APPSPPPSKR 1440 ARGSGKRGGK K

Sequence ? help Back to Top

Protein Sequence Length: 1451 aa Download sequence Send to blast

MLVRSLARPL TFPVKLLSPG RPSDAHVGGA WPACYELSVR RFRPPSCRLL PACLLLCKVN  60
DRGRHSVGQG GHWEGTVAGI VQLFQGSGWG DDRTTATVQP VAPRTRPISS LERPSGQAEW  120
VQRGLISLHP LGRKLRSFLA AQSPALCDYP AAETMKASIK FLDDDRPLMR AKSGLSAGGD  180
PRELRFDLST TFSSGPALRL SYRPNDPGLP FALTVRAGVG PLGSPGRAPF VIAAEFNLLS  240
SDPSSPAFFL RLKPRLGDFS LGHTIRSSAV PAPAPRTIVE ASDGDGEGHE VNYKAFSFSG  300
NGIAAAGRSG GLGLGALLSG MRLTTRSVLP LWGRASLRFN WGLRVPPELQ PGALADGHSK  360
GARAPVSKMP LLVMSKISIE QSPRSDGVRK CARADASVAA TADGSDGSGH GGGEEVAFSL  420
VRRQLEELNV ENVMLRRAVE DLRAEIRSSM DASPAAPRVD ARRSPPPPQP QSHSFLAKPD  480
RRGNGKEPAA ENAKKASAVA VDDVGEELKK ALEARRRLPR HEPSHGVLPR RKQRETPDVD  540
NDKKNLYGST STSLCAKIIV SHTTPPLKSS PAFAPPATFV AFSTHAPDSP VNAQPNPTFF  600
DRSSTNHTER EHCHKTRRLV PQRCVARVAR VAAKPESMEL CVKDSMITDA GKRFIIPSKI  660
AGGDEARSPN QTNQTLATFH FYPWRRRYEP PRPLKPRRRS GRAEESGMTP RSDDPDVAPG  720
PVPVPVSAAA GGEIWDTREE LLLASALKRH GTGSWDSVSM EMQSRCVSAA DARFTPSGCR  780
QRALLLHRRF AAGGGGDDDG DPDAAAADAL VEKLRKLRCD ELRRAVEQHD LLIGAAPGDP  840
SDAYRSVAVF SLVEMLTRRV FIIRMIRSLQ SKVKRLEEER ERSNSGKRTP AVKEEAEDEE  900
AVHATGSPKD DDLAGADRVS GGESGRSCKE SNSTDLKPRP GNDAGTASPS AAGDGDAEAR  960
EEEAAGGESV SVKREETSGE SVAGSKEADA TKENSDEQSW ASPSRRASWL TERHGEGGKD  1020
AEEALPSTSA PAALPAVEAE ALSAFLESVR TSKPGSVFER RLESQRRTWS RTARTVASGA  1080
GPSDERGEVE IRAQVGGAGE GAFRAHAWPA KGQIISGHVG VRNLLGPSCR PTCSKQRSTC  1140
SAYCELDDAN YRSTIRRHVD LETIRSKLEV GGSGPRYSSA SEFYRDLLLL CTNALVFFPR  1200
GSPEHAAAVQ TRALVSKHMS ASLRKDRPGT SGKAAAATSA ASKKPKADAD VGSLLEKTAP  1260
IIVCRKRSSI TKAAAAKAEK VKEETEEDQE DDAKKMVATK EKTRGLRTTK TRGGLTRKAA  1320
PRQKAGKDSE SESVAAEGTK KSDKKGGRGA STGGVAKKRN AVDFLNRMKQ NSGPSTERVS  1380
LLETLKLSAA AEEKKPGKGE ARKESGSGSK RGGKATPPGR RMGRPPKRAA APPSPPPSKR  1440
ARGSGKRGGK K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1392	1398	EKKPGKG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970635	5e-39	EU970635.1 Zea mays clone 348255 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4217	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-16	DNA-binding bromodomain-containing protein