PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g03430.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 343aa MW: 35932.5 Da PI: 4.9975

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g03430.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.3e-14	275	328	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N +L k+ ee+ ++ ++ Zjn_sc00015.1.g03430.1.sm.mkhc 275 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNAELMKKQEEMMEMQKN 328 79******************************************9999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-11	271	335	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	273	324	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.90E-28	275	329	No hit	No description
Pfam	PF00170	1.8E-12	275	327	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-10	275	324	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-14	275	324	No hit	No description
PROSITE pattern	PS00036	0	278	293	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MDLKDGERRG PPLARQGSIY SLTFDEFQST LGGVGGGLGK DFGSMNMDEL LRSIWTAEES 60 QAMASASGAA APAVEDGALQ RQGSLTLPRT LSVKTVDEVW RDFVREGAPP DGGGGGEPQP 120 SRQPTLGEMT LEEFLVRAGV VRENPAAAAA VAAAGISAPP VAAPRPIQAV GNGSSIFFGN 180 FGGASDAGAG AMGFAPVGIG DPSTIGNGLM PGVAGMGGAP VSVSPLDTSV AQLDSVGKGN 240 SDLSSPSPMA PVPYPFDGVI RGRRSGAGVE KVVERRQRRM IKNRESAARS RARKQAYTME 300 LEAEVQKLKE LNAELMKKQE EMMEMQKNQG EKSAFMWHLW ADN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MDLKDGERRG PPLARQGSIY SLTFDEFQST LGGVGGGLGK DFGSMNMDEL LRSIWTAEES  60
QAMASASGAA APAVEDGALQ RQGSLTLPRT LSVKTVDEVW RDFVREGAPP DGGGGGEPQP  120
SRQPTLGEMT LEEFLVRAGV VRENPAAAAA VAAAGISAPP VAAPRPIQAV GNGSSIFFGN  180
FGGASDAGAG AMGFAPVGIG DPSTIGNGLM PGVAGMGGAP VSVSPLDTSV AQLDSVGKGN  240
SDLSSPSPMA PVPYPFDGVI RGRRSGAGVE KVVERRQRRM IKNRESAARS RARKQAYTME  300
LEAEVQKLKE LNAELMKKQE EMMEMQKNQG EKSAFMWHLW ADN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973666.1	1e-158	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-133	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A2T7D8L4	1e-157	A0A2T7D8L4_9POAL; Uncharacterized protein
STRING	Si013904m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	5e-31	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]