PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00015.1.g02960.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 455aa MW: 48029 Da PI: 10.0788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00015.1.g02960.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Zjn_sc00015.1.g02960.1.am.mk 150 FECHYCRRNFPTSQALGGHQNAH 172 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-5	147	178	No hit	No description
PROSITE profile	PS50157	11.323	150	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MKQLVPNQIV VPTPQLRRDA SDRDPIQSRM SERDAPDGKT SASAGAAASI DSFSQLPFIH 60 PGLPPPPPPR PPPSAGSTPG IRLFGIDVPP DASATAKTAS PPPPPPTGVK VTEAANVVEE 120 SAETTNTDAT TTTTAGAGAS GDGAGGARKF ECHYCRRNFP TSQALGGHQN AHKRERQHAK 180 RAQFQTAMAM HHRHHHGQYY PLVPDAAHLH ATYRHHHRFS AAPPPPPHYP SWAGAGRYSY 240 YNGPGSISQP INGSPVAPSG SWRGPLGGVG VGAAFAARSQ ERPAPPPSLP VPGVGGEEPR 300 LGGMARPPGS RSFSPSTSSS SSSSSPHQLP APPEHKENVR EEAACPLLEI LTDRARSTPP 360 GCSPDLCINP WRTLLLGYRP PTQTAKKLMK YTQMQDCATT ACNVGGKRAP GRIGELGSSG 420 EHWAMKAAAP SMEALPLGRN LSRLIIRQAC QLKAR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MKQLVPNQIV VPTPQLRRDA SDRDPIQSRM SERDAPDGKT SASAGAAASI DSFSQLPFIH  60
PGLPPPPPPR PPPSAGSTPG IRLFGIDVPP DASATAKTAS PPPPPPTGVK VTEAANVVEE  120
SAETTNTDAT TTTTAGAGAS GDGAGGARKF ECHYCRRNFP TSQALGGHQN AHKRERQHAK  180
RAQFQTAMAM HHRHHHGQYY PLVPDAAHLH ATYRHHHRFS AAPPPPPHYP SWAGAGRYSY  240
YNGPGSISQP INGSPVAPSG SWRGPLGGVG VGAAFAARSQ ERPAPPPSLP VPGVGGEEPR  300
LGGMARPPGS RSFSPSTSSS SSSSSPHQLP APPEHKENVR EEAACPLLEI LTDRARSTPP  360
GCSPDLCINP WRTLLLGYRP PTQTAKKLMK YTQMQDCATT ACNVGGKRAP GRIGELGSSG  420
EHWAMKAAAP SMEALPLGRN LSRLIIRQAC QLKAR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058457	5e-58	AK058457.1 Oryza sativa Japonica Group cDNA clone:001-015-H09, full insert sequence.
GenBank	AP005405	5e-58	AP005405.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1111C03.
GenBank	AP005871	5e-58	AP005871.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1116H04.
GenBank	AP014964	5e-58	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	5e-58	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142755.1	1e-75	Zinc finger protein
TrEMBL	A0A0A9IGN1	1e-75	A0A0A9IGN1_ARUDO; Uncharacterized protein
STRING	GRMZM2G151639_P01	5e-75	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP834	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	2e-17	zinc finger protein 8