PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g06160.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 207aa MW: 23353.7 Da PI: 9.8272

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g06160.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	36	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t Zjn_sc00014.1.g06160.1.sm.mkhc 36 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTG 113 69*************************.89***********556667899******************* PP NAM 80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wkatg d++++s+ +g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Zjn_sc00014.1.g06160.1.sm.mkhc 114 SGFWKATGIDRPIYSAtsSGKSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164 **********99888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-55	34	171	IPR003441	NAC domain
PROSITE profile	PS51005	51.825	35	188	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MVAKEFAREA VSLDKVKSDG EALMAAGDGE EEDVVLPGFR FHPTDEELVS FYLRRKVARK 60 PLSVEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDRPIYSAT SSGKSIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPMAAAA NSASPSMQEA 180 VSSMLSVSTS SQRIDRQFAQ WHHKEMM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-50	28	164	8	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055579	1e-124	BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBank	HQ858689	1e-124	HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795725.1	1e-120	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-75	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3L6TSA4	1e-122	A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1
STRING	Si036447m	1e-119	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	8e-68	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]