PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g05300.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 404aa    MW: 43104.9 Da    PI: 9.5937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g05300.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049225247123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC+ CgksF +   L  H  tH
  Zjn_sc00014.1.g05300.1.am.mk 225 FKCSVCGKSFGSYQALGGHKTTH 247
                                   89********9999998888887 PP
2zf-C2H211.80.00075299321123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F++   L  H r+H
  Zjn_sc00014.1.g05300.1.am.mk 299 HRCSICHKEFPTGQALGGHKRKH 321
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-9225247No hitNo description
Gene3DG3DSA:3.30.160.601.8E-4225250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-12225249IPR007087Zinc finger, C2H2
SMARTSM003550.0087225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.986225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-9294321No hitNo description
PfamPF139122.2E-12298323IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058299321IPR007087Zinc finger, C2H2
SMARTSM003550.043299321IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDMDRALPGQ RRPQAGWHMF VVIRLLPATT ASHIQPTSDG VAALVSPRAH IYTHTSHHQS  60
SFPLPLPAAE ASGAPRLPLR LLPVRAFPST LTTTFSLLRC RPAVHHTSTG TRPKRNKSRS  120
GLEQPKLELS LIPIAMTTAM ELLHAALPEQ QRHEQEEEVA LTTSSSGDEG AHVPQGWAKR  180
KRSRRQRSEE ENLALCLLML SRGGNHRVQA PPPPAEPLTA AAAEFKCSVC GKSFGSYQAL  240
GGHKTTHRAK QPARPATSGP VVEDAVPISA IPPTVAELRE PATSSTAASS DGTTASRVHR  300
CSICHKEFPT GQALGGHKRK HYDGGVGNSA AASAELPAVA AAAAETSEVG SSGNGSSAAR  360
AFDLNLPALP EFVWRCAKAG TMWEEDEEVQ SPLAFKKPRL LMTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5960641e-126KT596064.1 Zoysia japonica cultivar Companion C2H2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-107zinc finger protein 1
SwissprotQ424301e-101ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ201e-120A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGSb01g007170.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.25e-25zinc-finger protein 2