PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g04720.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 378aa MW: 41083.1 Da PI: 8.4097

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g04720.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.4	7.8e-41	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++lp+++r da++sl+yeAear++dPvyG+v+ i+ Zjn_sc00014.1.g04720.1.am.mk 7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFSCVHRVFGASNVTKILNDLPQHQRGDAVASLAYEAEARIHDPVYGCVSYIT 87 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq + +q ++e+a++++e Zjn_sc00014.1.g04720.1.am.mk 88 ALQVRFNQIREEIAAARKE 106 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.605	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-40	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFSCVH RVFGASNVTK ILNDLPQHQR 60 GDAVASLAYE AEARIHDPVY GCVSYITALQ VRFNQIREEI AAARKELARY IGPAAFVPLV 120 AAAPQYHHQQ YAGGVHLGVA HGHPHHQQQM VQLQHQHQQM AEAQQMAAAV EVAREQGVMM 180 RQAATYAHAL QGSDAGAAVA IVPHDAGAPY DGAFLLQQQQ QPAPHAQTAV ALTYQMGSSP 240 PPSSPGQSPP EEVSHQQHTD GSDESSGGVA QPAHRTPSTN KTHLSKGKTV SSATVRGKGR 300 KKAPGRKQPS EDQQHPPRDH EAGTEVEEKE PEREERERER ERELLPNCPL PSVVACTYRK 360 RRPLPQFRFI PGVVVAVG

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFSCVH RVFGASNVTK ILNDLPQHQR  60
GDAVASLAYE AEARIHDPVY GCVSYITALQ VRFNQIREEI AAARKELARY IGPAAFVPLV  120
AAAPQYHHQQ YAGGVHLGVA HGHPHHQQQM VQLQHQHQQM AEAQQMAAAV EVAREQGVMM  180
RQAATYAHAL QGSDAGAAVA IVPHDAGAPY DGAFLLQQQQ QPAPHAQTAV ALTYQMGSSP  240
PPSSPGQSPP EEVSHQQHTD GSDESSGGVA QPAHRTPSTN KTHLSKGKTV SSATVRGKGR  300
KKAPGRKQPS EDQQHPPRDH EAGTEVEEKE PEREERERER ERELLPNCPL PSVVACTYRK  360
RRPLPQFRFI PGVVVAVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	4	110	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704292.1	1e-100	LOB domain-containing protein 6
TrEMBL	A0A1E5VYJ4	1e-104	A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRING	Si036905m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-50	ASYMMETRIC LEAVES 2-like 1