PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g04600.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21250.2 Da    PI: 10.0557
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g04600.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.2e-32959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyeys+
  Zjn_sc00014.1.g04600.1.sm.mkhc  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYST 59
                                    79***********************************************96 PP
2K-box289.1e-11631133799
                           K-box  37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                     hl+Ge+Le+L+lkeLqqLe+            +++l+le+i+elq+kek+lqeenk L+k+l 
  Zjn_sc00014.1.g04600.1.sm.mkhc  63 HLMGEELETLNLKELQQLER------------QSQLMLESISELQRKEKSLQEENKVLQKELV 113
                                     9*****************95............69*************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002655.45E-39261No hitNo description
SuperFamilySSF554551.7E-30276IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.39340129IPR002487Transcription factor, K-box
PfamPF014867.5E-761112IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYSTD  60
SWHLMGEELE TLNLKELQQL ERQSQLMLES ISELQRKEKS LQEENKVLQK ELVEKQKAQK  120
QQVQWEHGQQ PQTSSSSSTF KTREAPPTVN ISTYPVAAGV RVDGAPERPE VRFGLPPWRM  180
SHHNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21160161MEF2C
5f28_B7e-21160161MEF2C
5f28_C7e-21160161MEF2C
5f28_D7e-21160161MEF2C
6byy_A8e-21160161MEF2 CHIMERA
6byy_B8e-21160161MEF2 CHIMERA
6byy_C8e-21160161MEF2 CHIMERA
6byy_D8e-21160161MEF2 CHIMERA
6bz1_A8e-21160161MEF2 CHIMERA
6bz1_B8e-21160161MEF2 CHIMERA
6bz1_C8e-21160161MEF2 CHIMERA
6bz1_D8e-21160161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306322e-86AJ430632.1 Zea mays mRNA for putative MADS-domain transcription factor (m15 gene).
GenBankBT0659932e-86BT065993.1 Zea mays full-length cDNA clone ZM_BFb0138G13 mRNA, complete cds.
GenBankKJ7269272e-86KJ726927.1 Zea mays clone pUT3472 MADS transcription factor (MADS15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981740.11e-78MADS-box transcription factor 14 isoform X1
SwissprotQ10CQ19e-74MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0A9QQM84e-86A0A0A9QQM8_ARUDO; Uncharacterized protein
STRINGBRADI1G08340.13e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-44AGAMOUS-like 8
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]