PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g03710.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 381aa    MW: 40788.3 Da    PI: 10.5287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g03710.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31315373259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Zjn_sc00014.1.g03710.1.sm.mkhc 315 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 373
                                     69*************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-6293312IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.4E-34302374IPR003657WRKY domain
PROSITE profilePS5081129.964309375IPR003657WRKY domain
SuperFamilySSF1182906.67E-27312374IPR003657WRKY domain
SMARTSM007749.5E-39314374IPR003657WRKY domain
PfamPF031068.3E-27316372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGMEEASRA AVQSCHRVLA LLSEPQGQLD LNKDLAAATG EAVSKFGSLT SKLANGNGRQ  60
GHARVRKVKK PLAIIDSNLF LESPAVAAAD AAAAAKTPKP SPITGLQLFP RYKQQGEGSS  120
SKEPVRIPSQ FPKRLLLENP AVDLEGPSLA PPLRLVHPVS VAPPAGAPHP ALPAAHLQFI  180
QQHQSYQRYQ FMQQMRIQSE MMRRSSLGDQ GQGGSGSAAA GKGVNLKFDG SNCTASSSRS  240
FLSSLSMEGS LANLEASRAS RSFQLVSGSQ TASTPELGGQ RRRCTGKADG SGRKLRIRRS  300
IKVPAISNKV ADIPADEFSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDDPS  360
MLIVTYEGDH NHNQALAQPA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-203123731272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0662382e-90BT066238.1 Zea mays full-length cDNA clone ZM_BFc0113I20 mRNA, complete cds.
GenBankKJ7275842e-90KJ727584.1 Zea mays clone pUT5444 WRKY transcription factor (WRKY113) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG41e-178WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-60WRKY DNA-binding protein 74