PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g02230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 331aa    MW: 35112.7 Da    PI: 10.2506
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g02230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer827e-261565457
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                   +Y++C++NhAa+lG++a DGC+E++p+   ++++aa+ CaACgCHRnFHR+  
  Zjn_sc00014.1.g02230.1.am.mk 15 EVYRDCMRNHAAKLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 65
                                  68*************************8...678*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.8E-211664IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.5141764IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-201763IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-191763IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.65E-16104178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26106178IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-27117178IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEQQQQPQQQ ERPREVYRDC MRNHAAKLGT YASDGCCEYT PDDAHPAAML CAACGCHRNF  60
HRKAFLDAVS GATDAASPHA PPMLPSPGPA PAGYGMHMAL AASAGMGGGA HGFASRRRTR  120
TKFTEEQKER MLRFAERLGW RMPKREPGRA PGDDEVARFC REIGVTRQVF KVWMHNHKVG  180
GGSGGGASAA GVGGAAQTSS STTRGGGGAA GGGGSMSPAM GEDDEEVRGS EMCIVRARAV  240
PRSSPSVIRP LCELHMEAES VTRASVPNDR IPAAPRVPAT RHPRTPKGVK AQPGPVDAAG  300
NAGMRHTDMK AWRRAVTTAA TRATRIADLK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-181161851780ZF-HD homeobox family protein
1wh7_A4e-181171851880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3699061e-76AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466561.12e-96zinc-finger homeodomain protein 11
RefseqXP_020168474.12e-96zinc-finger homeodomain protein 11-like
SwissprotA2XLF42e-90ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-90ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6U0853e-97A0A3B6U085_WHEAT; Uncharacterized protein
STRINGTraes_4AL_5659286D11.13e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-32homeobox protein 22