PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g01600.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 616aa    MW: 64986.9 Da    PI: 4.8546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g01600.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.81.2e-1422336121374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+
  Zjn_sc00014.1.g01600.1.am.mk 233 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAADS--SLLDAAFAD 303
                                   689****************************************************........3333333..344444444 PP

                          GRAS  82 kl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                    l   f+e +P+lkf+h+taNqaIlea++g++rvH+iDf+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+
  Zjn_sc00014.1.g01600.1.am.mk 304 LLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVIDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQ 384
                                   33445**************************************************************************** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                   ++g++La+fA++++v+f+++ lva +l+dle+ +L+ +        E++aVn+v++lhrll++++sle+    vL +v+ +
  Zjn_sc00014.1.g01600.1.am.mk 385 QVGWKLAQFAHTIHVDFQYRGLVAATLADLEPFMLQQEGeekndePEVIAVNSVFELHRLLAQPGSLEK----VLGTVRAV 461
                                   ***********************************54434445669***********************....******** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleak..........lpreseerikvErellgreivnvvacegaer 305
                                   +Pk+v+vveqea+hns+sFl+rf+e+l+yys++fdsle +          +++++ +++++++++lgr+i+nvvacegaer
  Zjn_sc00014.1.g01600.1.am.mk 462 RPKIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGgfgqsdaspgAAAAAGTDQVMSEVYLGRQICNVVACEGAER 542
                                   *************************************988899999988877888************************** PP

                          GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +erhe++++Wrer+++aGF+p++l+++a+ qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Zjn_sc00014.1.g01600.1.am.mk 543 TERHEKMGQWRERFGRAGFEPLHLGSNAYRQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 612
                                   *********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011297.9E-3238115No hitNo description
PfamPF120414.8E-3638108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.926207591IPR005202Transcription factor GRAS
PfamPF035144.1E-140233612IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKREYQDAGG SASGGADLGS SKDKMMVAPA AEQEEEVDEL LAALGYKVRA SDMADVAQKL  60
EQLEMAMETG GAAADDGFVS HLATDTVHYN PSDLSSWVES MLSELNAPLP PAPAPPAPLL  120
ASTSSTVTGG GGSGAGYFDA PPAVDSSSST YALKPIPSPV AALGDPSVDS AREPKRMRTG  180
GGSTSSSSSS SSSLGGGGAR SSVVEGAPPA SAAANAPAVP VVMVDTQEAG IRLVHALLAC  240
AEAVQQENFS AAEALVKQIP MLASSQGGAM RKVAAYFGEA LARRVYRFRP AADSSLLDAA  300
FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVI DFGIKQGMQW PALLQALALR  360
PGGPPSFRLT GVGPPQPDET DALQQVGWKL AQFAHTIHVD FQYRGLVAAT LADLEPFMLQ  420
QEGEEKNDEP EVIAVNSVFE LHRLLAQPGS LEKVLGTVRA VRPKIVTVVE QEANHNSGSF  480
LDRFTESLHY YSTMFDSLEG GGFGQSDASP GAAAAAGTDQ VMSEVYLGRQ ICNVVACEGA  540
ERTERHEKMG QWRERFGRAG FEPLHLGSNA YRQASTLLAL FAGGDGYRVE EKDGCLTLGW  600
HTRPLIATSA WRLSAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6324061125377Protein SCARECROW
5b3h_D2e-6324061125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7992730.0JN799273.1 Eragrostis tef bio-material 494365 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992740.0JN799274.1 Eragrostis tef bio-material 494324 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992750.0JN799275.1 Eragrostis tef bio-material 494487 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992760.0JN799276.1 Eragrostis tef bio-material 524435 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992770.0JN799277.1 Eragrostis tef bio-material 358595 reduced height-2 (rht1-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2920.0H9A292_ERATE; Reduced height-2
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]