PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g05260.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 262aa    MW: 27522 Da    PI: 8.6218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g05260.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004592114123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC+ CgksF +   L  H  +H
  Zjn_sc00013.1.g05260.1.sm.mk  92 FKCSVCGKSFGSYQALGGHKTSH 114
                                   89********9998888887776 PP
2zf-C2H212.50.00043165187123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F++   L  H r+H
  Zjn_sc00013.1.g05260.1.sm.mk 165 HRCSICHKEFPTGQALGGHKRKH 187
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01192114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.00192115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-1292115IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-992114No hitNo description
PROSITE profilePS5015712.32192119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-9160187No hitNo description
PfamPF139121.2E-12164189IPR007087Zinc finger, C2H2
SMARTSM003550.043165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058165187IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSSAMELLQA VLPEHHQREK EVALTTSSSA ATSGDEGAHV PQGWAKRKRS RRQRSEEENL  60
ALCLLMLSRG VHHRVQAPPP PLPEPLATAA EFKCSVCGKS FGSYQALGGH KTSHRVKQPA  120
AAAPLVEAPV PTTAVAPPVS ELREPATSST VASSDGTTAT TGRVHRCSIC HKEFPTGQAL  180
GGHKRKHYDG GVGSGAASAA AAETSEVGSS GNGSSAARAF DLNLPAAPEL VWRCAKPGNM  240
REDDEEVQSP LAFKKPRLLM TA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5960640.0KT596064.1 Zoysia japonica cultivar Companion C2H2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644480.11e-107zinc finger protein 1
SwissprotQ424302e-99ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ200.0A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGGRMZM2G035103_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-29zinc-finger protein 2